Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

7357355 .. 7365138

Gene Structure 7784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGGAACCTCGAAGATTGTGCAGGTAAGGTGGGTTATGGTGGTGCAGGTGTCAGTACTTGCACCGCTTCGAACGTTCACTTGCCTAGGAGCTTTAGTGTCAACTCTTCAAATTCAAATGGTGATGAGGATTTGAAGCAGCTACGCAGATTAACCGTTTCGACAAAAAAGAACAACGATGTGAAGAAAGAGGGTAACGGAGCAGCTGGAGGTTCCGACACGCAGAGAAGGCCGATTGTTAGAGAATGTCCCATTGTCAAACAACGCACAAGGAATAGTGGGATGGGCATGAGGAGTTATAGTGTTGGCTTGAAAATGGGAAGGATTGATGAAGAAATAGCTTCTACTTTTGAGGAAGATGATGAAGTCGATGTCGATCAAGGCAGATCTCTGCCAAAATTCACGAGAATAAATGTGGCGGAATTGACCAGACTGCTCTGGCTTCCTTGTGCAGAAAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.84

Weight (kDa)

8.39

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	2 cut(s)	14, 38
AciI	CCGC	2 cut(s)	66, 419
AclI	AACGTT	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	112, 398
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	111, 117, 136, 313
AluBI	AGCT	4 cut(s)	93, 142, 206, 341
AluI	AGCT	4 cut(s)	93, 142, 206, 341
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	139, 203
ApoI	RAATTY	2 cut(s)	112, 398
AspA2I	CCTAGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	86
BauI	CACGAG	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	151, 215
BccI	CCATC	1 cut(s)	277
BcgI	CGANNNNNNTGC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	2 cut(s)	14, 38
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	2 cut(s)	140, 204
BlnI	CCTAGG	1 cut(s)	86
BlsI	GCNGC	2 cut(s)	141, 205
BmcAI	AGTACT	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	8, 214
BpmI	CTGGAG	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 286, 316
Bse8I	GATNNNNATC	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	151, 215
BsgI	GTGCAG	2 cut(s)	42, 66
BshFI	GGCC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	376, 386
BspACI	CCGC	2 cut(s)	66, 419
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	8, 214
BspMI	ACCTGC	2 cut(s)	14, 38
BspT104I	TTCGAA	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	376, 386
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	379, 389
BstMBI	GATC	2 cut(s)	376, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 458
BstV1I	GCAGC	2 cut(s)	151, 215
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	288
BveI	ACCTGC	2 cut(s)	14, 38
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	93, 142, 206, 232, 309, 341, 442
CviKI_1	RGCY	7 cut(s)	93, 142, 206, 232, 309, 341, 442
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	378, 388
DpnII	GATC	2 cut(s)	376, 386
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	39, 290, 300
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	140, 204
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	140, 204
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	140, 204
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	79, 103
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	2 cut(s)	79, 103
HpyAV	CCTTC	2 cut(s)	222, 315
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	23, 47, 63, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 458
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	376, 386
LmnI	GCTCC	2 cut(s)	90, 200
LpnPI	CCDG	5 cut(s)	9, 33, 192, 424, 442
Lsp1109I	GCAGC	2 cut(s)	151, 215
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	378, 388
MboI	GATC	2 cut(s)	376, 386
MboII	GAAGA	5 cut(s)	26, 99, 196, 344, 368
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	3 cut(s)	112, 398, 422
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	20, 121, 184, 203, 285, 346
MseI	TTAA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	229, 458
NdeII	GATC	2 cut(s)	376, 386
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	8, 214
NspV	TTCGAA	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	141, 205
Psp1406I	AACGTT	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	8, 214
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	2 cut(s)	140, 204
Sau3AI	GATC	2 cut(s)	376, 386
ScaI	AGTACT	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	71
Sse9I	AATT	3 cut(s)	112, 398, 422
SsiI	CCGC	2 cut(s)	66, 419
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	12, 71, 161, 369, 375
TasI	AATT	3 cut(s)	112, 398, 422
TatI	WGTACW	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	2 cut(s)	139, 203
TspDTI	ATGAA	2 cut(s)	345, 378
TspGWI	ACGGA	1 cut(s)	213
XapI	RAATTY	2 cut(s)	112, 398
XmaJI	CCTAGG	1 cut(s)	86
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.