Rh6CG043700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000667
Physical Location & Seq
Reverse (-)
4298654 .. 4299223
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG043700.1

Sequence Viewer

Length: 570 bp
ATGAGGCAGAGCAAAGCAACTAGGCAAAGCAAGTTGATGCGCTTTATTTCTTCACCCATTAGGACTCTAACCAAGGCCAAGAACTTCTACATGAGGAGTTTAGAAGGTTGTGCTGCCAAGGTGGGTTACGGCGGCGGCGGCGGTGTGGGTGGTTACACTGCTTCACAAGTTCCACAGTTGCCAAGGAGCCTCGGCGTCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGAACGGCATCGTCAAAGAAGAACAACGATGCAGAGAAAGGGGACAATAAGGCAGCAGGTTCAGATATGAACCGAAGAGGAAGACCAAATGTTAGTATTAAACAACCGACAATGAATAATGGGATGGGGATGAGGAGTTATAGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGAAATGAAGGCGGATTTTTATACAAGAAGCAGAAGTTATGCTGTTAACCGAGATTTGCTGGATTTGTATGGCAAAGCAACAATTTGTTTTAAGTTTTTTGATTGCTCATTTGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

9.65

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
AciI CCGC 5 cut(s) 132, 135, 138, 141, 461
AcyI GRCGYC 1 cut(s) 195
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 113, 235, 296
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 100, 247, 308
BccI CCATC 2 cut(s) 361, 394
BceAI ACGGC 2 cut(s) 145, 264
BfaI CTAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 6 cut(s) 114, 133, 136, 139, 236, 297
BlsI GCNGC 6 cut(s) 115, 134, 137, 140, 237, 298
BmiI GGNNCC 1 cut(s) 188
BmsI GCATC 3 cut(s) 27, 260, 262
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 72, 117, 182, 190
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 72, 117, 182, 190
BseGI GGATG 2 cut(s) 372, 378
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 3 cut(s) 109, 193, 391
BseXI GCAGC 3 cut(s) 100, 247, 308
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 212
BspACI CCGC 5 cut(s) 132, 135, 138, 141, 461
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 290
BspT104I TTCGAA 1 cut(s) 212
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 4 cut(s) 72, 117, 182, 190
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 3 cut(s) 72, 117, 182
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 313
BstACI GRCGYC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 372, 378
BstHHI GCGC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 100, 247, 308
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 372, 378
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 184
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 77, 189, 238, 425
CviKI_1 RGCY 4 cut(s) 77, 189, 238, 425
DdeI CTNAG 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
EciI GGCGGA 1 cut(s) 476
Eco130I CCWWGG 3 cut(s) 72, 117, 182
EcoT14I CCWWGG 3 cut(s) 72, 117, 182
ErhI CCWWGG 3 cut(s) 72, 117, 182
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 92, 311, 384, 471, 489, 519
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 114, 133, 136, 139, 236, 297
FokI GGATG 2 cut(s) 379, 385
Fsp4HI GCNGC 6 cut(s) 114, 133, 136, 139, 236, 297
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 41
GluI GCNGC 6 cut(s) 114, 133, 136, 139, 236, 297
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 199, 496
HindII GTYRAC 2 cut(s) 199, 496
HinfI GANTC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 496
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 199, 496
Hpy188I TCNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 199, 496
HpyAV CCTTC 3 cut(s) 98, 399, 451
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 496
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 3 cut(s) 220, 285, 494
Lsp1109I GCAGC 3 cut(s) 100, 247, 308
LweI GCATC 3 cut(s) 27, 260, 262
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 125, 152
MboII GAAGA 6 cut(s) 42, 274, 330, 336, 409, 452
MluCI AATT 1 cut(s) 531
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 9 cut(s) 87, 200, 214, 217, 225, 314, 369, 409, 430
MseI TTAA 3 cut(s) 342, 495, 540
MwoI GCNNNNNNNGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 171
NspV TTCGAA 1 cut(s) 212
PkrI GCNGC 6 cut(s) 115, 134, 137, 140, 237, 298
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 342, 495, 540
SatI GCNGC 6 cut(s) 114, 133, 136, 139, 236, 297
SchI GAGTC 1 cut(s) 58
SetI ASST 4 cut(s) 109, 123, 240, 304
SfaNI GCATC 3 cut(s) 27, 260, 262
SfuI TTCGAA 1 cut(s) 212
Sse9I AATT 1 cut(s) 531
SsiI CCGC 5 cut(s) 132, 135, 138, 141, 461
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 3 cut(s) 72, 117, 182
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 212, 428, 450
TasI AATT 1 cut(s) 531
TauI GCSGC 3 cut(s) 135, 138, 141
Tru1I TTAA 3 cut(s) 342, 495, 540
Tru9I TTAA 3 cut(s) 342, 495, 540
TscAI CASTG 1 cut(s) 163
TseI GCWGC 3 cut(s) 113, 235, 296
TspDTI ATGAA 4 cut(s) 326, 371, 459, 470
TspRI CASTG 1 cut(s) 163
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.