Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

13586200 .. 13589073

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACCGGCGGTGGGTCATCGGGGAGGTTACCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGGGAGCGGAGGAGGAGAGCCATTGCTGCTAAGATATACTCTGGCCTCAGAGCCCAGGGCAGCTACAAGCTTCCCAAGCACTGCGACAACAACGAGGTCTTGAAAGCTCTATGTGCTGAAGCTGGTTGGGTCGTTGAAGAAGATGGCACTACTTACCGCAAGGGATGCAAGCCACCAATTGAAATTGCAGGCACTCCCACAAATATGAGTGCGTGTTCATCTATGCAACCAAGCCCACAATCCTCATCTTTCCCAAGTCCTGTGCCGTCCTACCATGCCAGTCCATCATCCTCCTCCTTTCCCAGCCCAACTCGTTTCGATGGAAACCCCTCCTCTTACCATCAAAACCCGTCCTCTTACCTTCTTCCATTCCTGCATAACTTGGCTTCCATTCCCACCAATCTTCCTCCTCTTAGAATTTCCAACAGTGCTCCTGTCACTCCTCCTCTTTCTTCTCCAACCTCTAGAGGATCAAAGCGGAAACCTGACTGGGAATCCCTTACTAATGGCTGCATAAACTCGTTGCGCCACCCCCTTTTTGCAGCCTCTGCCCCTTCAAGTCCTACTCGGCGCCACCATCTTGCACCTGCCACAATTCCAGAATGTGACGAGTCTGATGCTTCCACAGTGGACTCCGGTCGGTGGGTGAGTTTCCAAACAGGGGTACCTTCAGTAGCTCCACCTTCGCCCACATTTAATCTTATGAAACCGGTGGCTGAGCAGAATGTTCTTCAGCAGACTGTTGTTGGGCATGGGGGGATTGGTTGGGGGAACCCTGTGGAGAGGGCACGAGGCTCCGAGTTTGAGTTTGAGAGTGGCAGGCTGAAAGCTTGGGAGGGTGAGAGAATACATGAGGTTGGAGTGGAAGATCTGGAGCTTACACTTGGGAATGGGAAGATGCATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

323

Amino Acids

34.97

Weight (kDa)

9.04

Isoelectric Point (pI)

75.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	6 - 149	9.9e-66	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
Acc65I	GGTACC	1 cut(s)	727
AccB1I	GGYRCC	2 cut(s)	633, 727
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	9, 70, 220, 541
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	3 cut(s)	201, 717, 779
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	1 cut(s)	729
AfiI	CCNNNNNNNGG	3 cut(s)	12, 705, 724
AgeI	ACCGGT	1 cut(s)	772
AgsI	TTSAA	4 cut(s)	166, 200, 245, 621
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	7 cut(s)	126, 133, 170, 185, 740, 893, 940
AluI	AGCT	7 cut(s)	126, 133, 170, 185, 740, 893, 940
Alw21I	GWGCWC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	89, 123, 573, 605
ApoI	RAATTY	1 cut(s)	480
AsiGI	ACCGGT	1 cut(s)	772
Asp718I	GGTACC	1 cut(s)	727
AspLEI	GCGC	2 cut(s)	591, 636
AsuHPI	GGTGA	2 cut(s)	721, 914
BaeGI	GKGCMC	1 cut(s)	853
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BanI	GGYRCC	2 cut(s)	633, 727
BanII	GRGCYC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	4 cut(s)	76, 135, 560, 617
BccI	CCATC	5 cut(s)	200, 355, 377, 411, 648
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	1 cut(s)	119
BfaI	CTAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	931
BisI	GCNGC	4 cut(s)	90, 124, 574, 606
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	4 cut(s)	91, 125, 575, 607
Bme1390I	CCNGG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	635, 729, 836, 859
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	3 cut(s)	218, 670, 951
BmuI	ACTGGG	1 cut(s)	562
BoxI	GACNNNNGTC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	956
Bpu1102I	GCTNAGC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	117, 118
BsaWI	WCCGGW	2 cut(s)	698, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 705, 724
Bse118I	RCCGGY	2 cut(s)	5, 772
Bse1I	ACTGG	2 cut(s)	342, 557
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	117, 118
BseGI	GGATG	2 cut(s)	233, 350
BseLI	CCNNNNNNNGG	3 cut(s)	12, 705, 724
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	124, 771
BseNI	ACTGG	2 cut(s)	342, 557
BseRI	GAGGAG	8 cut(s)	76, 88, 91, 346, 385, 462, 495, 498
BseSI	GKGCMC	1 cut(s)	853
BseXI	GCAGC	4 cut(s)	76, 135, 560, 617
BseYI	CCCAGC	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	2 cut(s)	633, 727
BshTI	ACCGGT	1 cut(s)	772
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	3 cut(s)	6, 699, 773
BslI	CCNNNNNNNGG	3 cut(s)	12, 705, 724
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	118, 496, 853
Bsp143I	GATC	2 cut(s)	533, 931
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	4 cut(s)	9, 70, 220, 541
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	123, 772
BspLI	GGNNCC	4 cut(s)	635, 729, 836, 859
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	2 cut(s)	633, 727
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	2 cut(s)	5, 772
BsrI	ACTGG	2 cut(s)	342, 557
BssAI	RCCGGY	2 cut(s)	5, 772
BssECI	CCNNGG	2 cut(s)	117, 118
BssMI	GATC	2 cut(s)	533, 931
BssNI	GRCGYC	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	852
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	491, 691, 805
BstACI	GRCGYC	1 cut(s)	634
BstAPI	GCANNNNNTGC	2 cut(s)	228, 611
BstC8I	GCNNGC	3 cut(s)	233, 253, 884
BstDEI	CTNAG	4 cut(s)	93, 110, 476, 780
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	233, 350
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	591, 636
BstKTI	GATC	2 cut(s)	536, 934
BstMBI	GATC	2 cut(s)	533, 931
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 611
BstNI	CCWGG	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	699
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	853
BstV1I	GCAGC	4 cut(s)	76, 135, 560, 617
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuRI	GGCC	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	233, 350
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	142, 496, 696
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	233, 253, 884
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	2 cut(s)	591, 636
Cfr10I	RCCGGY	2 cut(s)	5, 772
Csp6I	GTAC	1 cut(s)	728
CspAI	ACCGGT	1 cut(s)	772
CviAII	CATG	3 cut(s)	338, 815, 914
CviQI	GTAC	1 cut(s)	728
DdeI	CTNAG	4 cut(s)	93, 110, 476, 780
DinI	GGCGCC	1 cut(s)	635
DpnI	GATC	2 cut(s)	535, 933
DpnII	GATC	2 cut(s)	533, 931
Eco24I	GRGCYC	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	201, 717, 779
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	635
EheI	GGCGCC	1 cut(s)	635
FaeI	CATG	3 cut(s)	341, 818, 917
FatI	CATG	3 cut(s)	337, 814, 913
Fnu4HI	GCNGC	4 cut(s)	90, 124, 574, 606
FokI	GGATG	2 cut(s)	240, 337
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	90, 124, 574, 606
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	590, 635
GluI	GCNGC	4 cut(s)	90, 124, 574, 606
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	956
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	6, 699, 773
HhaI	GCGC	2 cut(s)	591, 636
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	341, 818, 917
Hin6I	GCGC	2 cut(s)	589, 634
HinP1I	GCGC	2 cut(s)	589, 634
HindIII	AAGCTT	2 cut(s)	131, 891
HinfI	GANTC	3 cut(s)	557, 674, 695
HpaII	CCGG	3 cut(s)	6, 699, 773
HphI	GGTGA	2 cut(s)	721, 914
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	113, 679, 862
Hpy188III	TCNNGA	4 cut(s)	163, 528, 662, 935
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	5 cut(s)	34, 434, 627, 741, 756
HpyCH4III	ACNGT	3 cut(s)	491, 691, 805
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	8 cut(s)	231, 251, 289, 439, 576, 605, 647, 964
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 611
HpyF3I	CTNAG	4 cut(s)	93, 110, 476, 780
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	341, 818, 917
HspAI	GCGC	2 cut(s)	589, 634
KasI	GGCGCC	1 cut(s)	633
KpnI	GGTACC	1 cut(s)	731
Kzo9I	GATC	2 cut(s)	533, 931
LmnI	GCTCC	5 cut(s)	67, 499, 745, 863, 937
Lsp1109I	GCAGC	4 cut(s)	76, 135, 560, 617
LweI	GCATC	3 cut(s)	218, 670, 951
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	27, 499, 668
MalI	GATC	2 cut(s)	535, 933
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	2 cut(s)	533, 931
MboII	GAAGA	8 cut(s)	212, 215, 419, 458, 507, 785, 941, 970
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	3 cut(s)	118, 496, 853
MluCI	AATT	4 cut(s)	240, 246, 480, 657
Mly113I	GGCGCC	1 cut(s)	634
MlyI	GAGTC	2 cut(s)	683, 689
MmeI	TCCRAC	3 cut(s)	510, 545, 901
Mph1103I	ATGCAT	1 cut(s)	966
MseI	TTAA	2 cut(s)	759, 970
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	3 cut(s)	6, 699, 773
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 611
NarI	GGCGCC	1 cut(s)	634
NdeII	GATC	2 cut(s)	533, 931
NlaIII	CATG	3 cut(s)	341, 818, 917
NlaIV	GGNNCC	4 cut(s)	635, 729, 836, 859
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	499, 668
NsiI	ATGCAT	1 cut(s)	966
PaqCI	CACCTGC	1 cut(s)	658
PasI	CCCWGGG	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	557
PinAI	ACCGGT	1 cut(s)	772
PkrI	GCNGC	4 cut(s)	91, 125, 575, 607
PleI	GAGTC	2 cut(s)	682, 689
PluTI	GGCGCC	1 cut(s)	637
PpsI	GAGTC	2 cut(s)	682, 689
PshAI	GACNNNNGTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	117
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	4 cut(s)	635, 729, 836, 859
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	931
RsaI	GTAC	1 cut(s)	729
RsaNI	GTAC	1 cut(s)	728
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	759, 970
SatI	GCNGC	4 cut(s)	90, 124, 574, 606
Sau3AI	GATC	2 cut(s)	533, 931
SchI	GAGTC	2 cut(s)	683, 689
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	118, 496, 853
SfaNI	GCATC	3 cut(s)	218, 670, 951
SfoI	GGCGCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	240, 246, 480, 657
SsiI	CCGC	4 cut(s)	9, 70, 220, 541
SspDI	GGCGCC	1 cut(s)	633
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	491, 691, 805
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	240, 246, 480, 657
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	759, 970
Tru9I	TTAA	2 cut(s)	759, 970
TscAI	CASTG	3 cut(s)	149, 496, 696
TseFI	GTSAC	2 cut(s)	499, 668
TseI	GCWGC	4 cut(s)	89, 123, 573, 605
Tsp45I	GTSAC	2 cut(s)	499, 668
TspDTI	ATGAA	2 cut(s)	270, 782
TspRI	CASTG	3 cut(s)	149, 496, 696
XapI	RAATTY	1 cut(s)	480
XbaI	TCTAGA	1 cut(s)	527
XspI	CTAG	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.