Rw6G004570

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
7393988 .. 7394512
525 bp
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UTR
Exon/CDS
Intron
Rw6G004570.1

Sequence Viewer

Length: 525 bp
ATGAGGCAGAGCAAAGCAACTAGGCAAAGCAAGTTGATGCGCTTTATTTCTTCACCCATTAGGACTCTAACCAAGGCCAAGAACTTCTACATGAGGAGTTTAGAAGATTGTGCTGCCAAGGTGGGTTACGGCGGCGGCGGCGGCGGCGTGGGTGGTTACACTGCTTCACAAGTTCCACAGTTGCCAAGGAGCTTCAGCGTCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGAACGGCATCGTCAAAGAAGAACAACGATACAGAGAAAGGGGACAATAAGGCAGCAGGTTCAGATATGAACCGAAGAGGAAGACCAAATGTTAGTATTAAACAACCGACAATGAATAATGGGATGGGGATGAGGAGTTATAGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGAAATGAAGGCGGATTTTTATACAAGAAGCAGAAGTTATGCTGTTAACAAGAGATTTGCTGGATTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.27

Weight (kDa)

9.95

Isoelectric Point (pI)

67.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AciI CCGC 6 cut(s) 132, 135, 138, 141, 144, 464
AcuI CTGAAG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 2 cut(s) 192, 241
AluI AGCT 2 cut(s) 192, 241
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 113, 238, 299
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 100, 250, 311
BccI CCATC 2 cut(s) 364, 397
BceAI ACGGC 2 cut(s) 145, 267
BfaI CTAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
BlsI GCNGC 8 cut(s) 115, 134, 137, 140, 143, 146, 240, 301
BmsI GCATC 2 cut(s) 27, 263
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 72, 117, 185
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 72, 117, 185
BseGI GGATG 2 cut(s) 375, 381
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 3 cut(s) 109, 196, 394
BseXI GCAGC 3 cut(s) 100, 250, 311
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 6 cut(s) 132, 135, 138, 141, 144, 464
BspANI GGCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 72, 117, 185
BssT1I CCWWGG 3 cut(s) 72, 117, 185
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 375, 381
BstHHI GCGC 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 138, 141, 144
BstV1I GCAGC 3 cut(s) 100, 250, 311
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 375, 381
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 187
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 77, 192, 241, 428
CviKI_1 RGCY 4 cut(s) 77, 192, 241, 428
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 72, 117, 185
Eco57I CTGAAG 1 cut(s) 178
EcoT14I CCWWGG 3 cut(s) 72, 117, 185
ErhI CCWWGG 3 cut(s) 72, 117, 185
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 92, 314, 387, 474, 492, 523
FaqI GGGAC 1 cut(s) 302
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
FokI GGATG 2 cut(s) 382, 388
Fsp4HI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 41
GluI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 202, 499
HindII GTYRAC 2 cut(s) 202, 499
HinfI GANTC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 202, 499
Hpy188I TCNGA 1 cut(s) 310
Hpy8I GTNNAC 2 cut(s) 202, 499
HpyAV CCTTC 2 cut(s) 402, 454
HpyCH4III ACNGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 141, 144
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 3 cut(s) 223, 288, 498
Lsp1109I GCAGC 3 cut(s) 100, 250, 311
LweI GCATC 2 cut(s) 27, 263
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 125, 155
MboII GAAGA 7 cut(s) 42, 116, 277, 333, 339, 412, 455
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 8 cut(s) 87, 217, 220, 228, 317, 372, 412, 433
MseI TTAA 2 cut(s) 345, 498
MwoI GCNNNNNNNGC 3 cut(s) 138, 141, 144
NlaIII CATG 1 cut(s) 94
NspV TTCGAA 1 cut(s) 215
PkrI GCNGC 8 cut(s) 115, 134, 137, 140, 143, 146, 240, 301
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 345, 498
SatI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
SchI GAGTC 1 cut(s) 58
SetI ASST 4 cut(s) 123, 194, 243, 307
SfaNI GCATC 2 cut(s) 27, 263
SfuI TTCGAA 1 cut(s) 215
SsiI CCGC 6 cut(s) 132, 135, 138, 141, 144, 464
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 3 cut(s) 72, 117, 185
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 215, 431, 453
TauI GCSGC 5 cut(s) 135, 138, 141, 144, 147
Tru1I TTAA 2 cut(s) 345, 498
Tru9I TTAA 2 cut(s) 345, 498
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 113, 238, 299
TspDTI ATGAA 4 cut(s) 329, 374, 462, 473
TspRI CASTG 1 cut(s) 166
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.