Rroxscaffold_7G00212850

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000667
Physical Location & Seq
Forward (+)
63398886 .. 63399410
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212850.1

Sequence Viewer

Length: 525 bp
ATGAGGCAGAGCAATGCAACTAAGCGAAGCAAGTTGATGCGCTTTATATCTTCACCCATTAGGATACTAACCAAGGCCAAGAACTTCTACATGAAGAGTTTAGAAGATTGTGCTGCGAAGGTGGGTTATGGTGGCGGTGGCGCTGGTGTGGGCGGTTACACTGCTTCACAAGTACCACAGTTGCCCAGGAGCTTCAGCGTCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGATTCTAAGGACGGCGTCGTCAAAGAAGAATAACGATGCAGAGAAACGGGACAACAAGGTAGCAGGTTCAGAGATGCACAGAAGAGGAAGACCAAACGTTAGTATTAGACAACCCACAATGAATAATGGGATGGGGTTGAGGAGCTACAGTGTTGGATTGAAGATGGGACGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGATGTGAAGGCGGATTTTTATACAAGAAGCAGAAGTTATGCTGTTAACAAGAGAAATGCTGGGTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

10.04

Isoelectric Point (pI)

74.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 293
AciI CCGC 3 cut(s) 135, 153, 464
AclI AACGTT 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 192, 384
AluI AGCT 2 cut(s) 192, 384
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 42, 143
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 364, 397
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 187
BciVI GTATCC 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 385
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 3 cut(s) 27, 265, 303
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 72, 185
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 72, 185
BseGI GGATG 1 cut(s) 375
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 196, 394
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 512
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 2 cut(s) 302, 420
BsmFI GGGAC 2 cut(s) 302, 420
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 3 cut(s) 135, 153, 464
BspANI GGCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 72, 185
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 180, 389
Bst6I CTCTTC 2 cut(s) 89, 316
BstACI GRCGYC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 21, 245
BstF5I GGATG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 42, 143
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 334
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 394
BveI ACCTGC 1 cut(s) 293
CfoI GCGC 2 cut(s) 42, 143
CseI GACGC 2 cut(s) 187, 243
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 77, 192, 384, 428
CviKI_1 RGCY 4 cut(s) 77, 192, 384, 428
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 21, 245
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 89, 316
EarI CTCTTC 2 cut(s) 89, 316
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 47, 92, 129, 474, 492, 523
FaqI GGGAC 2 cut(s) 302, 420
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 114
GlaI GCGC 2 cut(s) 41, 142
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 2 cut(s) 187, 243
HhaI GCGC 2 cut(s) 42, 143
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 2 cut(s) 40, 141
HinP1I GCGC 2 cut(s) 40, 141
HincII GTYRAC 2 cut(s) 202, 499
HindII GTYRAC 2 cut(s) 202, 499
HinfI GANTC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 202, 499
Hpy188I TCNGA 1 cut(s) 310
Hpy8I GTNNAC 2 cut(s) 202, 499
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 112, 454
HpyCH4III ACNGT 2 cut(s) 180, 389
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 17, 278, 316
HpyF3I CTNAG 2 cut(s) 21, 245
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 2 cut(s) 40, 141
KspAI GTTAAC 1 cut(s) 499
LmnI GCTCC 2 cut(s) 189, 381
LpnPI CCDG 6 cut(s) 129, 172, 199, 223, 288, 498
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 3 cut(s) 27, 265, 303
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 8 cut(s) 42, 106, 116, 277, 333, 339, 412, 455
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 7 cut(s) 217, 220, 228, 317, 372, 412, 433
MseI TTAA 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 94
NspV TTCGAA 1 cut(s) 215
PfeI GAWTC 1 cut(s) 241
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 115
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 187
SetI ASST 6 cut(s) 123, 194, 300, 307, 339, 386
SfaNI GCATC 3 cut(s) 27, 265, 303
SfcI CTRYAG 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 215
SsiI CCGC 3 cut(s) 135, 153, 464
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 180, 389
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 215, 431, 453
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 166, 394
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 107, 374, 462
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 2 cut(s) 166, 394
Tth111I GACNNNGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.