RchiOBHm_Chr6g0248901

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000667
Physical Location & Seq
Reverse (-)
4775582 .. 4776180
599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22311

Sequence Viewer

Length: 498 bp
ATGCGCTTTATTTCTTTACCCTTTCGGACTTTAGCCAAGGCCAGGAACTTCTACATGAGGGGTTTGGAAGATTGCGCCAGTAAGGTGGGTGGCGGCGGCGGTGTTGGCGGTTACGCTGCTTCGCAAGTTCACTTGCCGAGGAGCTTTAGTGTCAACTCTTCGGGTTCAAACGACGACGAGGATGTGAGGCAGCTTATCAGAACTGCGTCGTCAAAGAAGAACAATGCAGGGAAAGAGAACAAGGACCACAATATCAGGACTGCAGCTAGTTCAGATGTGAATAGAAGTAGTGTTAGACCAATTGTTGGTGTTAGACAAGCTGCGAATGGTACTAACAATGGGAGAGGGATGAGGAGCTATAGTGTTGGGTTGAAGATGATGAGGATTGATGAGGAAAGGGCTTCTACTTTTGAGGAAGATGAAGTCGATGTCAAGGCAGATGTGTATACAAGGAGCAGAAGCTATGCTGTTAATAAAAGAAATGCTGGGTTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.0

Weight (kDa)

9.99

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 446
AciI CCGC 4 cut(s) 93, 96, 99, 108
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 42, 305
AgsI TTSAA 2 cut(s) 168, 373
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 6 cut(s) 144, 193, 266, 320, 357, 462
AluI AGCT 6 cut(s) 144, 193, 266, 320, 357, 462
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 4 cut(s) 116, 190, 263, 320
AspLEI GCGC 2 cut(s) 6, 77
AspS9I GGNCC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 103, 202, 275, 307
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 261, 358
BisI GCNGC 6 cut(s) 94, 97, 117, 191, 264, 321
BlsI GCNGC 6 cut(s) 95, 98, 118, 192, 265, 322
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 36, 137
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 305
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 36, 137
BseGI GGATG 2 cut(s) 187, 354
BseLI CCNNNNNNNGG 2 cut(s) 42, 305
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 154, 367
BseXI GCAGC 4 cut(s) 103, 202, 275, 307
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 42, 305
BsnI GGCC 1 cut(s) 41
BspACI CCGC 4 cut(s) 93, 96, 99, 108
BspANI GGCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 36, 137
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 163
BstF5I GGATG 2 cut(s) 187, 354
BstHHI GCGC 2 cut(s) 6, 77
BstMWI GCNNNNNNNGC 2 cut(s) 105, 491
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 2 cut(s) 261, 358
BstV1I GCAGC 4 cut(s) 103, 202, 275, 307
BstXI CCANNNNNNTGG 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 187, 354
CfoI GCGC 2 cut(s) 6, 77
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 330
CviAII CATG 1 cut(s) 55
CviJI RGCY 9 cut(s) 35, 41, 144, 193, 266, 320, 357, 401, 462
CviKI_1 RGCY 9 cut(s) 35, 41, 144, 193, 266, 320, 357, 401, 462
CviQI GTAC 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 58
FaiI YATR 5 cut(s) 56, 360, 447, 465, 496
FatI CATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 6 cut(s) 94, 97, 117, 191, 264, 321
FokI GGATG 2 cut(s) 194, 361
Fsp4HI GCNGC 6 cut(s) 94, 97, 117, 191, 264, 321
FspBI CTAG 1 cut(s) 267
GlaI GCGC 2 cut(s) 5, 76
GluI GCNGC 6 cut(s) 94, 97, 117, 191, 264, 321
GsaI CCCAGC 1 cut(s) 489
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 195
HhaI GCGC 2 cut(s) 6, 77
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 2 cut(s) 4, 75
HinP1I GCGC 2 cut(s) 4, 75
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 130, 154, 447
Hpy188I TCNGA 3 cut(s) 27, 200, 274
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 130, 154, 447
Hpy99I CGWCG 3 cut(s) 176, 179, 211
HpyCH4V TGCA 3 cut(s) 227, 263, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 491
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 2 cut(s) 4, 75
LmnI GCTCC 3 cut(s) 141, 354, 453
LpnPI CCDG 6 cut(s) 28, 55, 91, 213, 241, 471
Lsp1109I GCAGC 4 cut(s) 103, 202, 275, 307
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 110
MboII GAAGA 5 cut(s) 80, 150, 229, 385, 428
MfeI CAATTG 1 cut(s) 300
MluCI AATT 1 cut(s) 300
MnlI CCTC 9 cut(s) 51, 132, 172, 180, 338, 345, 375, 385, 406
MseI TTAA 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 105, 491
NlaIII CATG 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 6 cut(s) 95, 98, 118, 192, 265, 322
Psp6I CCWGG 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 265
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 6 cut(s) 94, 97, 117, 191, 264, 321
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 43
SetI ASST 7 cut(s) 87, 146, 195, 268, 322, 359, 464
SfcI CTRYAG 2 cut(s) 261, 358
SinI GGWCC 1 cut(s) 244
Sse9I AATT 1 cut(s) 300
SsiI CCGC 4 cut(s) 93, 96, 99, 108
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 1 cut(s) 426
TasI AATT 1 cut(s) 300
TauI GCSGC 2 cut(s) 96, 99
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TseI GCWGC 4 cut(s) 116, 190, 263, 320
TspDTI ATGAA 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.