Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

19696570 .. 19697888

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG209200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGGTTTTGTTGTTACAATTACACGATGAGCAACGCGATCAAGAGTAGCAAAGGAAGCAGATTCAGCAGGTTCATGAAGGCGCCTATAAGAGTTTTGATTAAGGCGAGGGATTTCTACATCAAGAGCATGACCGAGTGCTCCACTCGATTCGACTATGGTGGCATGGCCATGGGCTGCCCTACCGCCCAAGTCCCAAGTGCTTTGCCAAGAAGCTTCAGCACCAGCTCCGTCAAGTCGTCAAGCAGCAGCAACAATGATGATTACAGAGAGCTCATGAGGGCTGCTTCTGCTAGAAGCACTTTCGCCTATAACAAAAATATGGAGGATCTTGGGAGAAAGCAGCAGATCATCAATAGTACCGGAGCCAATAATGCGATGATGAATCGTAGTCGCAGCGTTGGAATTGGAAGGATTGATGAAGACAAGGCTTGCGAATTTGGTGAAGAAGATGTCAACAAGAATATGTATCCAAGAAGCAGAAGCTCTGCTGTTGCTAGGAGAACAACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

171

Amino Acids

19.22

Weight (kDa)

9.89

Isoelectric Point (pI)

63.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	82
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	186
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	361
AluBI	AGCT	4 cut(s)	216, 228, 274, 486
AluI	AGCT	4 cut(s)	216, 228, 274, 486
Alw21I	GWGCWC	2 cut(s)	143, 276
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	6 cut(s)	177, 246, 249, 284, 343, 396
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	143, 276
BbvI	GCAGC	6 cut(s)	164, 258, 261, 271, 355, 408
BciVI	GTATCC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	294, 498
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	6 cut(s)	178, 247, 250, 285, 344, 397
BlsI	GCNGC	6 cut(s)	179, 248, 251, 286, 345, 398
BmiI	GGNNCC	2 cut(s)	84, 367
BpiI	GAAGAC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	171
BseXI	GCAGC	6 cut(s)	164, 258, 261, 271, 355, 408
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	143, 276
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	143, 276
Bsp143I	GATC	3 cut(s)	39, 328, 348
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	2 cut(s)	75, 276
BspLI	GGNNCC	2 cut(s)	84, 367
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	39, 328, 348
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	433
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	3 cut(s)	42, 331, 351
BstMBI	GATC	3 cut(s)	39, 328, 348
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 290, 374
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	6 cut(s)	164, 258, 261, 271, 355, 408
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	2 cut(s)	75, 276
CfoI	GCGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	5 cut(s)	76, 130, 166, 172, 277
CviJI	RGCY	9 cut(s)	170, 177, 216, 228, 274, 284, 368, 431, 486
CviKI_1	RGCY	9 cut(s)	170, 177, 216, 228, 274, 284, 368, 431, 486
CviQI	GTAC	1 cut(s)	360
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	3 cut(s)	41, 330, 350
DpnII	GATC	3 cut(s)	39, 328, 348
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	79, 133, 169, 175, 280
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	5 cut(s)	75, 129, 165, 171, 276
Fnu4HI	GCNGC	6 cut(s)	178, 247, 250, 285, 344, 397
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	6 cut(s)	178, 247, 250, 285, 344, 397
FspBI	CTAG	2 cut(s)	294, 498
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	6 cut(s)	178, 247, 250, 285, 344, 397
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	5 cut(s)	79, 133, 169, 175, 280
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	63, 150, 385
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188III	TCNNGA	4 cut(s)	43, 76, 124, 277
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	73, 405
HpyCH4IV	ACGT	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 290, 374
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	79, 133, 169, 175, 280
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	39, 328, 348
LmnI	GCTCC	3 cut(s)	146, 233, 365
LpnPI	CCDG	3 cut(s)	55, 238, 376
Lsp1109I	GCAGC	6 cut(s)	164, 258, 261, 271, 355, 408
MaeI	CTAG	2 cut(s)	294, 498
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	41, 330, 350
MboI	GATC	3 cut(s)	39, 328, 348
MboII	GAAGA	3 cut(s)	434, 458, 461
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	143, 276
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	19, 405, 437
MluNI	TGGCCA	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	3 cut(s)	102, 273, 319
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 290, 374
NarI	GGCGCC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	39, 328, 348
NlaIII	CATG	5 cut(s)	79, 133, 169, 175, 280
NlaIV	GGNNCC	2 cut(s)	84, 367
PagI	TCATGA	2 cut(s)	75, 276
PfeI	GAWTC	3 cut(s)	63, 150, 385
PkrI	GCNGC	6 cut(s)	179, 248, 251, 286, 345, 398
PluTI	GGCGCC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	276
Psp1406I	AACGTT	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	84, 367
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	6 cut(s)	178, 247, 250, 285, 344, 397
Sau3AI	GATC	3 cut(s)	39, 328, 348
SduI	GDGCHC	2 cut(s)	143, 276
SetI	ASST	7 cut(s)	8, 74, 218, 230, 276, 488, 512
SfoI	GGCGCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	19, 405, 437
SsiI	CCGC	1 cut(s)	186
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	294, 498
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	148, 153
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	3 cut(s)	19, 405, 437
TfiI	GAWTC	3 cut(s)	63, 150, 385
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	6 cut(s)	177, 246, 249, 284, 343, 396
TspDTI	ATGAA	4 cut(s)	64, 92, 398, 435
TspGWI	ACGGA	1 cut(s)	220
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	2 cut(s)	294, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.