Prupe.8G148600_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000667
Physical Location & Seq
Reverse (-)
16311746 .. 16312693
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G148600.1

Sequence Viewer

Length: 540 bp
ATGAGGAGCAACGCAAAGAAGCAAAGCAAGTTGATGTACATTATTTGTGCACCCATTAGGACCTTGACCAAGGCCAGGAACTTTTACATGAGGAGCTTGGAAGATTGTGCTAGCAAGGTAGGTTATGGTGGTGGTGGAGTGAGTGGCTACACTGCCTCTCAAGTTCCACGCTTGCCCAAGAGCTTCAGTGTCAATTCCTCGAGCTCTAGCGACGATGAGGACTTGAGGCAGCTTCTCAGAACGGCGTCGTCGAAGAATTCAAAGAGGAATGATGTAGAGAAGAAGAACAATAATAAGCCTGCAGGTGATTTAGATGTGCATAAAAGACCAGTTGTGAGACAAGCAGCTCAACCCATTGCGAGACAACAAACTATGAATGGGATGGGGATGAGGAGTTATAGTGTAGGGTTGAAGATGGGAAGGATTGATGAGGAGAGGGCTTGTTCTTTTGAGGAAGATGAAGTGAATGTTGTGAAGGCTGATTTGTACCCAAGAAGTAGAAGTTATGCTGTCAAGAGAAGAAGTGGTGGGTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.89

Weight (kDa)

10.01

Isoelectric Point (pI)

74.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 2 cut(s) 38, 488
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 261, 412
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 5 cut(s) 96, 183, 204, 232, 347
AluI AGCT 5 cut(s) 96, 183, 204, 232, 347
Alw21I GWGCWC 2 cut(s) 52, 206
Alw26I GTCTC 2 cut(s) 331, 355
Alw44I GTGCAC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 229, 344
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 317
AsuNHI GCTAGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 52, 206
BbvI GCAGC 2 cut(s) 241, 356
BccI CCATC 2 cut(s) 376, 409
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 331, 355
BfaI CTAG 2 cut(s) 111, 207
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 2 cut(s) 230, 345
BlsI GCNGC 2 cut(s) 231, 346
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 144, 244
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 387, 393
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 4 cut(s) 19, 106, 406, 446
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 2 cut(s) 241, 356
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 52, 206
BsiHKCI CYCGRG 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 331, 355
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 52, 206
Bsp1407I TGTACA 1 cut(s) 36
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 112, 173, 300
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 387, 393
BstMAI GTCTC 2 cut(s) 331, 355
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 241, 356
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 387, 393
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 193
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 112, 173, 300
Cfr13I GGNCC 1 cut(s) 60
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 37, 487
CviAII CATG 1 cut(s) 88
CviQI GTAC 2 cut(s) 37, 487
DdeI CTNAG 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 89, 126, 321, 374, 399, 507, 538
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 230, 345
FokI GGATG 2 cut(s) 394, 400
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 230, 345
FspBI CTAG 2 cut(s) 111, 207
GluI GCNGC 2 cut(s) 230, 345
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 91
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 514
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 3 cut(s) 215, 250, 253
HpyAV CCTTC 2 cut(s) 414, 469
HpyCH4V TGCA 4 cut(s) 50, 302, 319, 536
HpyF3I CTNAG 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 91
LmnI GCTCC 2 cut(s) 6, 93
LpnPI CCDG 5 cut(s) 61, 88, 288, 312, 342
Lsp1109I GCAGC 2 cut(s) 241, 356
MaeI CTAG 2 cut(s) 111, 207
MboII GAAGA 7 cut(s) 113, 265, 292, 295, 424, 467, 531
MhlI GDGCHC 2 cut(s) 52, 206
MluCI AATT 2 cut(s) 193, 256
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PkrI GCNGC 2 cut(s) 231, 346
PpuMI RGGWCCY 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspPI GGNCC 1 cut(s) 60
PspPPI RGGWCCY 1 cut(s) 60
PspXI VCTCGAGB 1 cut(s) 199
PstI CTGCAG 1 cut(s) 304
RsaI GTAC 2 cut(s) 38, 488
RsaNI GTAC 2 cut(s) 37, 487
SacI GAGCTC 1 cut(s) 206
SatI GCNGC 2 cut(s) 230, 345
Sau96I GGNCC 1 cut(s) 60
SbfI CCTGCAGG 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 76
SdaI CCTGCAGG 1 cut(s) 304
SduI GDGCHC 2 cut(s) 52, 206
SetI ASST 9 cut(s) 65, 98, 120, 124, 185, 206, 234, 307, 349
SfcI CTRYAG 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 3 cut(s) 159, 199, 223
SmoI CTYRAG 3 cut(s) 159, 199, 223
Sse8387I CCTGCAGG 1 cut(s) 304
Sse9I AATT 2 cut(s) 193, 256
SspMI CTAG 2 cut(s) 111, 207
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 69
TaqI TCGA 2 cut(s) 200, 251
TasI AATT 2 cut(s) 193, 256
TatI WGTACW 1 cut(s) 36
TscAI CASTG 2 cut(s) 157, 193
TseI GCWGC 2 cut(s) 229, 344
TspDTI ATGAA 2 cut(s) 389, 474
TspRI CASTG 2 cut(s) 157, 193
VneI GTGCAC 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 199
XspI CTAG 2 cut(s) 111, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.