RLG00000015118

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000667
Physical Location & Seq
Forward (+)
62008954 .. 62010165
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015118

Sequence Viewer

Length: 330 bp
ATGAGGAGTTTAGAAGATTGTGCTGCCAAGGTGGGTTATGGCGACGGCGGCGGTGGTGTGGGTGGTTACACTGCTTCACAAGTTCCACAGTTGCCAAGGAGCTTCAGCGCTAATTCCTTCAATTCGAACGATCATGAGGATTTGAGGCAGCTTCTAAGGACGGCGCCGTCAAAGAAGAACAACGATGCAGAGAAAGGGGACTATAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTTGATGCTAAGGTGGATGTTTATACTAGAAGCAGAAGTTATGCTGTTAACAAGAGAGATGCTGGATTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

5.15

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 2 cut(s) 48, 51
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 164
AfeI AGCGCT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 102, 151
AluI AGCT 2 cut(s) 102, 151
Aor51HI AGCGCT 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 23, 148
AspLEI GCGC 2 cut(s) 110, 166
AsuII TTCGAA 1 cut(s) 125
BanI GGYRCC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 10, 160
BccI CCATC 1 cut(s) 202
BceAI ACGGC 3 cut(s) 61, 151, 177
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 2 cut(s) 111, 167
BisI GCNGC 3 cut(s) 24, 49, 149
BlsI GCNGC 3 cut(s) 25, 50, 150
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 3 cut(s) 175, 250, 304
Bpu10I CCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 27, 95
BseDI CCNNGG 2 cut(s) 27, 95
BseGI GGATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 10, 160
BshNI GGYRCC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 2 cut(s) 48, 51
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 27, 95
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 27, 95
Bst4CI ACNGT 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 155, 264
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 2 cut(s) 111, 167
BstHHI GCGC 2 cut(s) 110, 166
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 10, 160
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 133
CfoI GCGC 2 cut(s) 110, 166
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 102, 151, 233
CviKI_1 RGCY 3 cut(s) 102, 151, 233
DdeI CTNAG 2 cut(s) 155, 264
DinI GGCGCC 1 cut(s) 165
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 27, 95
Eco47III AGCGCT 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 27, 95
EgeI GGCGCC 1 cut(s) 165
EheI GGCGCC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 27, 95
FaeI CATG 1 cut(s) 137
FaiI YATR 6 cut(s) 39, 135, 204, 279, 297, 328
FaqI GGGAC 1 cut(s) 212
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 24, 49, 149
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 24, 49, 149
FspBI CTAG 1 cut(s) 282
GlaI GCGC 2 cut(s) 109, 165
GluI GCNGC 3 cut(s) 24, 49, 149
HaeII RGCGCY 2 cut(s) 111, 167
HhaI GCGC 2 cut(s) 110, 166
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 2 cut(s) 108, 164
HinP1I GCGC 2 cut(s) 108, 164
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaI GTTAAC 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 127, 207
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 2 cut(s) 155, 264
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 2 cut(s) 108, 164
KasI GGCGCC 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 303
Lsp1109I GCAGC 2 cut(s) 10, 160
LweI GCATC 3 cut(s) 175, 250, 304
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 26, 187, 260
MluCI AATT 2 cut(s) 112, 121
Mly113I GGCGCC 1 cut(s) 164
MnlI CCTC 4 cut(s) 130, 138, 217, 238
MseI TTAA 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 48
NarI GGCGCC 1 cut(s) 164
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 165
NspV TTCGAA 1 cut(s) 125
PagI TCATGA 1 cut(s) 133
PkrI GCNGC 3 cut(s) 25, 50, 150
PluTI GGCGCC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 24, 49, 149
Sau3AI GATC 1 cut(s) 130
SetI ASST 4 cut(s) 33, 104, 153, 270
SfaNI GCATC 3 cut(s) 175, 250, 304
SfoI GGCGCC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 125
SgeI CNNG 6 cut(s) 40, 92, 108, 146, 294, 319
Sse9I AATT 2 cut(s) 112, 121
SsiI CCGC 2 cut(s) 48, 51
SspDI GGCGCC 1 cut(s) 163
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 2 cut(s) 27, 95
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 125, 236
TasI AATT 2 cut(s) 112, 121
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 23, 148
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 76
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.