FvH4_2g32830

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000667
Physical Location & Seq
Forward (+)
24783937 .. 24785167
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32830.t1

Sequence Viewer

Length: 507 bp
ATGAGAAGCTCCACCACCAAGGCGCACAACCAGAACCGCTTCCTCAGAATCATCACAGTCCCCATCAGAGCCTTAGGCAAGGCCAAGGACTTTTACGTCAGAAGCATGACGGACGTCGGCGACAAGTTCAGCTACGGAGGTAGCACCATGTCCGGCCCCGGCGGGCAATTCTCCTCGGGTTTACCCAAAAGTTTCAGCACGAGGTCCTCATCGTCGAGGTCCAACCAGGGCAGCGATGACTTTTCCGAGCTGGTGAGGGCTGCATCGGCCAGGAGCTACGGGACTCGTATCGACGTGGATAAGATACTTCAGGACCAGCTGAAGAGGTCGGCGACGACGACGAGCATGGGATCGAGGCAGGTGTTACCTAAGTGCGGCAGCGTGGCCATGGGGAGAATTGACGAGGATGCCCCTTGTGATTTCGAGGAGGAAGGTGACGTGAAGAAGGACCTGTATCCCAGAAGCAGAAGCTATGCCGTCGGAAAGAGAAGCGTTGCGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.34

Weight (kDa)

9.8

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
AasI GACNNNNNNGTC 1 cut(s) 95
AatII GACGTC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 349
AciI CCGC 3 cut(s) 37, 162, 375
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 2 cut(s) 267, 384
AcuI CTGAAG 2 cut(s) 293, 341
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 374
AjiI CACGTC 2 cut(s) 295, 439
AjnI CCWGG 2 cut(s) 225, 269
AluBI AGCT 6 cut(s) 9, 132, 250, 276, 319, 471
AluI AGCT 6 cut(s) 9, 132, 250, 276, 319, 471
AlwI GGATC 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 4 cut(s) 81, 154, 267, 384
ApeKI GCWGC 3 cut(s) 231, 260, 378
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 5 cut(s) 155, 204, 219, 313, 448
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 265, 446
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 4 cut(s) 204, 219, 313, 448
AxyI CCTNAGG 1 cut(s) 73
BalI TGGCCA 1 cut(s) 386
BauI CACGAG 1 cut(s) 199
BbvI GCAGC 3 cut(s) 243, 247, 390
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 227, 271
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 4 cut(s) 232, 261, 376, 379
BlsI GCNGC 4 cut(s) 233, 262, 377, 380
Bme1390I CCNGG 3 cut(s) 159, 227, 271
Bme18I GGWCC 4 cut(s) 204, 219, 313, 448
BmeT110I CYCGRG 1 cut(s) 175
BmgBI CACGTC 2 cut(s) 295, 439
BmgT120I GGNCC 5 cut(s) 155, 204, 219, 313, 448
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 3 cut(s) 159, 227, 271
BmsI GCATC 2 cut(s) 272, 397
BoxI GACNNNNGTC 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 6 cut(s) 18, 84, 157, 174, 226, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse21I CCTNAGG 1 cut(s) 73
BseBI CCWGG 2 cut(s) 227, 271
BseDI CCNNGG 6 cut(s) 18, 84, 157, 174, 226, 387
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 163, 440
BseXI GCAGC 3 cut(s) 243, 247, 390
BshFI GGCC 4 cut(s) 83, 156, 269, 386
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 153, 159
BslFI GGGAC 2 cut(s) 44, 295
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 44, 295
BsnI GGCC 4 cut(s) 83, 156, 269, 386
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 3 cut(s) 37, 162, 375
BspANI GGCC 4 cut(s) 83, 156, 269, 386
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 358
BssECI CCNNGG 6 cut(s) 18, 84, 157, 174, 226, 387
BssMI GATC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 3 cut(s) 18, 84, 387
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 227, 271
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 44, 73, 369
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 2 cut(s) 227, 271
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 157, 225, 269
BstV1I GCAGC 3 cut(s) 243, 247, 390
Bsu36I CCTNAGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 4 cut(s) 83, 156, 269, 386
BtgI CCRYGG 1 cut(s) 387
BtgZI GCGATG 1 cut(s) 249
BtrI CACGTC 2 cut(s) 295, 439
BtsCI GGATG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 164
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 5 cut(s) 155, 204, 219, 313, 448
CviAII CATG 4 cut(s) 106, 148, 346, 388
DdeI CTNAG 3 cut(s) 44, 73, 369
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 267, 384
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 3 cut(s) 18, 84, 387
Eco47I GGWCC 4 cut(s) 204, 219, 313, 448
Eco57I CTGAAG 2 cut(s) 293, 341
Eco81I CCTNAGG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 204, 448
EcoRII CCWGG 2 cut(s) 225, 269
EcoT14I CCWWGG 3 cut(s) 18, 84, 387
ErhI CCWWGG 3 cut(s) 18, 84, 387
FaeI CATG 4 cut(s) 109, 151, 349, 391
FaiI YATR 5 cut(s) 107, 149, 347, 389, 474
FaqI GGGAC 2 cut(s) 44, 295
FatI CATG 4 cut(s) 105, 147, 345, 387
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 4 cut(s) 232, 261, 376, 379
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 4 cut(s) 232, 261, 376, 379
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 232, 261, 376, 379
HaeIII GGCC 4 cut(s) 83, 156, 269, 386
HapII CCGG 2 cut(s) 153, 159
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 109, 151, 349, 391
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 48, 283
HpaII CCGG 2 cut(s) 153, 159
HphI GGTGA 2 cut(s) 265, 446
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 5 cut(s) 47, 68, 101, 247, 482
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 7 cut(s) 119, 217, 296, 337, 340, 343, 482
HpyAV CCTTC 2 cut(s) 425, 439
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 4 cut(s) 96, 114, 294, 438
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 44, 73, 369
HpySE526I ACGT 4 cut(s) 96, 114, 294, 438
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 109, 151, 349, 391
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 14, 273
Lsp1109I GCAGC 3 cut(s) 243, 247, 390
LweI GCATC 2 cut(s) 272, 397
MaeII ACGT 4 cut(s) 96, 114, 294, 438
MaeIII GTNAC 2 cut(s) 363, 434
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 2 cut(s) 334, 454
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 2 cut(s) 167, 396
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 2 cut(s) 246, 460
Mox20I TGGCCA 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 153, 159
MspR9I CCNGG 3 cut(s) 159, 227, 271
MvaI CCWGG 2 cut(s) 227, 271
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 387
NdeII GATC 1 cut(s) 350
NlaIII CATG 4 cut(s) 109, 151, 349, 391
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 434
PaqCI CACCTGC 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 4 cut(s) 233, 262, 377, 380
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 2 cut(s) 204, 448
PshAI GACNNNNGTC 1 cut(s) 113
Psp5II RGGWCCY 2 cut(s) 204, 448
Psp6I CCWGG 2 cut(s) 225, 269
PspGI CCWGG 2 cut(s) 225, 269
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 5 cut(s) 155, 204, 219, 313, 448
PspPPI RGGWCCY 2 cut(s) 204, 448
PvuII CAGCTG 1 cut(s) 319
SatI GCNGC 4 cut(s) 232, 261, 376, 379
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 5 cut(s) 155, 204, 219, 313, 448
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 159, 227, 271
SfaNI GCATC 2 cut(s) 272, 397
SinI GGWCC 4 cut(s) 204, 219, 313, 448
Sse9I AATT 2 cut(s) 167, 396
SsiI CCGC 3 cut(s) 37, 162, 375
StyD4I CCNGG 3 cut(s) 157, 225, 269
StyI CCWWGG 3 cut(s) 18, 84, 387
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 4 cut(s) 99, 117, 297, 441
TaqI TCGA 4 cut(s) 215, 291, 353, 423
TasI AATT 2 cut(s) 167, 396
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 1 cut(s) 48
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 231, 260, 378
Tsp45I GTSAC 1 cut(s) 434
TspGWI ACGGA 2 cut(s) 125, 150
VpaK11BI GGWCC 4 cut(s) 204, 219, 313, 448
XmnI GAANNNNTTC 1 cut(s) 38
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.