RchiOBHm_Chr6g0248931

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000667
Physical Location & Seq
Reverse (-)
4811420 .. 4812002
583 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22314

Sequence Viewer

Length: 516 bp
ATGAGGCAGAGCAAAGCAACTAGGCAAAGCAAGTTGATGCGCTTTATTTCTTCACCCATTAGGACTCTAACCAAGGCCAAGAACTTCTACATGAGGAGTTTAGAAGATTGTGCTGCCAAGGTGGGTTACGGCGGCGGCGTGGGTGGTTACACTGCTTCACAAGTTCCACAGTTGCCAAGGAGCTTCAGCGTCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGAACGGCATCGTCAAAGAAGAACAACGATGCAGAGAAAGGGGACAATAAGGCAGCAGGTTCAGATATGAACCGAAGAGGAAGACCAAATGTTAGTATTAAACAACCGACAATGAATAATGGGATGGGGATGAGGAGTTATAGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGAAATGAAGGCGGATTTTTATACAAGAAGCAGAAGTTATGCTGTTAACAAGAGATTTGCTGGATTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.07

Weight (kDa)

9.95

Isoelectric Point (pI)

66.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AciI CCGC 3 cut(s) 132, 135, 455
AcuI CTGAAG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 391
AluBI AGCT 2 cut(s) 183, 232
AluI AGCT 2 cut(s) 183, 232
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 113, 229, 290
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 100, 241, 302
BccI CCATC 2 cut(s) 355, 388
BceAI ACGGC 2 cut(s) 145, 258
BfaI CTAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 5 cut(s) 114, 133, 136, 230, 291
BlsI GCNGC 5 cut(s) 115, 134, 137, 231, 292
BmsI GCATC 3 cut(s) 27, 254, 256
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 72, 117, 176
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 72, 117, 176
BseGI GGATG 2 cut(s) 366, 372
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 3 cut(s) 109, 187, 385
BseXI GCAGC 3 cut(s) 100, 241, 302
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 206
BspACI CCGC 3 cut(s) 132, 135, 455
BspANI GGCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 206
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 3 cut(s) 72, 117, 176
BssT1I CCWWGG 3 cut(s) 72, 117, 176
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 366, 372
BstHHI GCGC 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 100, 241, 302
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 366, 372
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 284
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 178
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 77, 183, 232, 419
CviKI_1 RGCY 4 cut(s) 77, 183, 232, 419
DdeI CTNAG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 470
Eco130I CCWWGG 3 cut(s) 72, 117, 176
Eco57I CTGAAG 1 cut(s) 169
EcoT14I CCWWGG 3 cut(s) 72, 117, 176
ErhI CCWWGG 3 cut(s) 72, 117, 176
FaeI CATG 1 cut(s) 94
FaiI YATR 5 cut(s) 92, 305, 378, 465, 483
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 114, 133, 136, 230, 291
FokI GGATG 2 cut(s) 373, 379
Fsp4HI GCNGC 5 cut(s) 114, 133, 136, 230, 291
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 41
GluI GCNGC 5 cut(s) 114, 133, 136, 230, 291
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 193, 490
HindII GTYRAC 2 cut(s) 193, 490
HinfI GANTC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 490
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 193, 490
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 2 cut(s) 193, 490
HpyAV CCTTC 2 cut(s) 393, 445
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 214, 279, 489
Lsp1109I GCAGC 3 cut(s) 100, 241, 302
LweI GCATC 3 cut(s) 27, 254, 256
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 125, 146
MboII GAAGA 7 cut(s) 42, 116, 268, 324, 330, 403, 446
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 8 cut(s) 87, 208, 211, 219, 308, 363, 403, 424
MseI TTAA 2 cut(s) 336, 489
NlaIII CATG 1 cut(s) 94
NspV TTCGAA 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PkrI GCNGC 5 cut(s) 115, 134, 137, 231, 292
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 336, 489
SatI GCNGC 5 cut(s) 114, 133, 136, 230, 291
SchI GAGTC 1 cut(s) 58
SetI ASST 4 cut(s) 123, 185, 234, 298
SfaNI GCATC 3 cut(s) 27, 254, 256
SfuI TTCGAA 1 cut(s) 206
SsiI CCGC 3 cut(s) 132, 135, 455
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 3 cut(s) 72, 117, 176
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 206, 422, 444
TauI GCSGC 2 cut(s) 135, 138
Tru1I TTAA 2 cut(s) 336, 489
Tru9I TTAA 2 cut(s) 336, 489
TscAI CASTG 1 cut(s) 157
TseI GCWGC 3 cut(s) 113, 229, 290
TspDTI ATGAA 4 cut(s) 320, 365, 453, 464
TspRI CASTG 1 cut(s) 157
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.