AT1G63220

C2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000507
Physical Location & Seq
Forward (+)
23448812 .. 23450530
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63220.2

Sequence Viewer

Length: 444 bp
ATGCCTCATGGAACTCTTGAAGTTGTTCTTGTCAGCGCCAAAGGTCTCGAGGACGCAGATTTTCTGAATAACATGGATCCTTATGTGCAACTCACTTGTCGGACTCAAGATCAGAAGAGCAACGTTGCAGAAGGAATGGGGACAACTCCGGAATGGAATGAGACATTTATCTTCACTGTCTCTGAAGGAACTACAGAGTTAAAAGCGAAAATCTTCGACAAAGATGTCGGTACAGAGGATGATGCGGTTGGTGAAGCAACTATTCCGTTGGAGCCGGTTTTCGTGGAAGGAAGTATTCCACCAACTGCATACAATGTGGTGAAAGATGAAGAGTACAAAGGAGAGATTTGGGTGGCTCTCTCCTTCAAGCCCTCGGAAAACCGAAGCAGGGGTATGGACGAGGAGTCCTATGGGGGCTGGAAAAACTCTGAAGCATCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

4.25

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 34 - 84 1.7e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 1 cut(s) 245
AclI AACGTT 1 cut(s) 123
AclWI GGATC 2 cut(s) 71, 84
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 232, 335
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 20, 367
AhdI GACNNNNNGTC 1 cut(s) 403
Alw26I GTCTC 3 cut(s) 50, 155, 184
AlwI GGATC 2 cut(s) 71, 84
Ama87I CYCGRG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 148
Asp700I GAANNNNTTC 2 cut(s) 24, 212
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 263, 331
AvaI CYCGRG 1 cut(s) 47
BamHI GGATCC 1 cut(s) 76
BcoDI GTCTC 3 cut(s) 50, 155, 184
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 78, 273
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 274
BseAI TCCGGA 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 149, 275
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 3 cut(s) 50, 155, 184
BsmFI GGGAC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 2 cut(s) 76, 109
BspACI CCGC 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 78, 273
BspPI GGATC 2 cut(s) 71, 84
BspQI GCTCTTC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 76, 109
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 110, 324
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 79, 112
BstMAI GTCTC 3 cut(s) 50, 155, 184
BstMBI GATC 2 cut(s) 76, 109
BstSFI CTRYAG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 274
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 231, 334
CviAII CATG 2 cut(s) 8, 73
CviJI RGCY 4 cut(s) 274, 356, 370, 417
CviKI_1 RGCY 4 cut(s) 274, 356, 370, 417
CviQI GTAC 2 cut(s) 231, 334
DpnI GATC 2 cut(s) 78, 111
DpnII GATC 2 cut(s) 76, 109
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 110, 324
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 2 cut(s) 110, 324
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 47
FaeI CATG 2 cut(s) 11, 76
FaiI YATR 7 cut(s) 9, 74, 84, 310, 395, 411, 439
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 7, 72
FokI GGATG 1 cut(s) 251
GlaI GCGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 2 cut(s) 149, 275
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 11, 76
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 2 cut(s) 103, 404
HpaII CCGG 2 cut(s) 149, 275
HphI GGTGA 2 cut(s) 263, 331
Hpy188I TCNGA 6 cut(s) 66, 102, 114, 184, 376, 430
Hpy188III TCNNGA 4 cut(s) 17, 47, 107, 149
HpyAV CCTTC 4 cut(s) 125, 179, 281, 373
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 88, 128, 308
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 11, 76
HspAI GCGC 1 cut(s) 36
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 76, 109
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 162, 288, 373, 403
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 78, 111
MboI GATC 2 cut(s) 76, 109
MboII GAAGA 4 cut(s) 127, 163, 205, 341
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 2 cut(s) 97, 413
MmeI TCCRAC 2 cut(s) 80, 249
MnlI CCTC 5 cut(s) 15, 43, 229, 382, 394
MroI TCCGGA 1 cut(s) 148
MroXI GAANNNNTTC 2 cut(s) 24, 212
MseI TTAA 1 cut(s) 200
MspI CCGG 2 cut(s) 149, 275
NdeII GATC 2 cut(s) 76, 109
NlaIII CATG 2 cut(s) 11, 76
NlaIV GGNNCC 2 cut(s) 78, 273
PaeR7I CTCGAG 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 110
PdmI GAANNNNTTC 2 cut(s) 24, 212
PleI GAGTC 2 cut(s) 97, 412
PpsI GAGTC 2 cut(s) 97, 412
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 78, 273
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 232, 335
RsaNI GTAC 2 cut(s) 231, 334
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 2 cut(s) 76, 109
SchI GAGTC 2 cut(s) 97, 413
SetI ASST 2 cut(s) 46, 126
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 47, 105
SmoI CTYRAG 2 cut(s) 47, 105
SsiI CCGC 1 cut(s) 245
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 48, 216
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 47
XmnI GAANNNNTTC 2 cut(s) 24, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.