Prupe.2G158500_v2.0.a1

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000507
Physical Location & Seq
Forward (+)
21142572 .. 21144851
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G158500.3

Sequence Viewer

Length: 456 bp
ATGCCTCTGGGAACGCTTGAAGTCGTTCTCGTTGAAGCCAGAGGCCTCAAGAAAACTGATTTTCTCTCTAAAATTGATCCCTATGTCGTTTTCACTGTGAAGACCCAGGAGAAGAAAAGCAATGTGGCCAAAGGGCAAGGAAATGAAGCAGAATGGAATGAAAGCTTTTTGTTCACAGTCTCGGAGGATGTTTCGGAGCTTCGTTTGAAAATAATGGACAAAGATACCTTTACTGCAGACGACTTCGTTGGGGAAGCAACCATTCCTTTAGAGCCATTGTTCGCTGAAGGAAGCCTTCCACCAACTATGTACGATGTTGTCAACAAGAACCAAGATTATCACGGAGAGATCAAAATTGGACTCACGTTCACTCCCGAGCCTGAGAGAAGCAACTTTCGTTCCAGAGACTATGCTGCTGAGGAGAACTATGGTGGATGGAAAGAATCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

152

Amino Acids

17.07

Weight (kDa)

4.62

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 3 cut(s) 20, 35, 208
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 2 cut(s) 165, 199
AluI AGCT 2 cut(s) 165, 199
Alw26I GTCTC 2 cut(s) 184, 399
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 2 cut(s) 43, 126
ApeKI GCWGC 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 374
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 184, 399
BfaI CTAG 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 193, 440
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 372, 408
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 400
BshFI GGCC 2 cut(s) 45, 128
BsiHKCI CYCGRG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 184, 399
BsnI GGCC 2 cut(s) 45, 128
BsoBI CYCGRG 1 cut(s) 374
Bsp143I GATC 2 cut(s) 76, 348
BspANI GGCC 2 cut(s) 45, 128
BspCNI CTCAG 2 cut(s) 373, 409
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 76, 348
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 97, 178
BstDEI CTNAG 2 cut(s) 381, 417
BstF5I GGATG 2 cut(s) 193, 440
BstKTI GATC 2 cut(s) 79, 351
BstMAI GTCTC 2 cut(s) 184, 399
BstMBI GATC 2 cut(s) 76, 348
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 45, 128
BtsCI GGATG 2 cut(s) 193, 440
BtsIMutI CAGTG 1 cut(s) 93
Csp6I GTAC 1 cut(s) 310
CviJI RGCY 8 cut(s) 38, 45, 128, 165, 199, 274, 294, 379
CviKI_1 RGCY 8 cut(s) 38, 45, 128, 165, 199, 274, 294, 379
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 381, 417
DpnI GATC 2 cut(s) 78, 350
DpnII GATC 2 cut(s) 76, 348
EaeI YGGCCR 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 105
FaiI YATR 4 cut(s) 84, 308, 411, 429
FalI AAGNNNNNCTT 2 cut(s) 279, 311
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 2 cut(s) 200, 447
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 1 cut(s) 454
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 2 cut(s) 45, 128
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 360, 443
Hpy166II GTNNAC 3 cut(s) 174, 322, 369
Hpy188I TCNGA 2 cut(s) 184, 196
Hpy188III TCNNGA 3 cut(s) 49, 374, 402
Hpy8I GTNNAC 3 cut(s) 174, 322, 369
HpyAV CCTTC 2 cut(s) 281, 305
HpyCH4III ACNGT 2 cut(s) 97, 178
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 381, 417
HpySE526I ACGT 1 cut(s) 365
Kzo9I GATC 2 cut(s) 76, 348
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 52, 92, 119, 393, 415
Lsp1109I GCAGC 1 cut(s) 400
MaeI CTAG 1 cut(s) 454
MaeII ACGT 1 cut(s) 365
MalI GATC 2 cut(s) 78, 350
MboI GATC 2 cut(s) 76, 348
MboII GAAGA 2 cut(s) 112, 124
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 2 cut(s) 72, 354
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 5 cut(s) 15, 35, 56, 178, 412
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeII GATC 2 cut(s) 76, 348
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PstI CTGCAG 1 cut(s) 238
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 2 cut(s) 76, 348
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 107
SetI ASST 4 cut(s) 167, 201, 230, 368
SfcI CTRYAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 72, 354
SseBI AGGCCT 1 cut(s) 45
SspMI CTAG 1 cut(s) 454
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 97, 178
TaiI ACGT 1 cut(s) 368
TasI AATT 2 cut(s) 72, 354
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 159, 174
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.