pycom07g12030

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000507
Physical Location & Seq
Reverse (-)
13344311 .. 13345996
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12030.3

Sequence Viewer

Length: 471 bp
ATGCCTCTCGGAACGCTTCAAGTTCTTCTCGTCGATGCCAAGGGCCTCGACAACAATGACTTTATGGCTGACATGGATCCCTATGTCCTTTTAACTGTAAAGACCCAAGAGAAGCAAAGCACTGTGGCCTCAGGGCAAGGATCTGCACCAGAATGGAATGAAACATTTCTATTCACCGTCTCAGATGATGTTTCCGAACTTCATTTGAAAATCATGGAGAAGGATAACTTCAGCGCGGATGATTTTGTCGGAGAAGCAACCATTTGTTTGGAGCCAGTGTTCAGTGAAGGAAGCCTTCCTCCCGCTGCATACAATGTTGTCAACAAGGACAAAGAATTTTGCGGAGAGATCAAAATCGGACTCACATTCACTCCTGAGCCTGAGAGAAGCAACGACTTTCCTTCTGGAGGGTATGGTGAATCTGAGGAGAGCTATGGCGGATGGAAACAATCGTCTTATGGGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

4.11

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 4 cut(s) 236, 303, 342, 438
AclWI GGATC 3 cut(s) 71, 84, 148
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 20, 208
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 3 cut(s) 71, 84, 148
AoxI GGCC 2 cut(s) 43, 126
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 166, 428
AxyI CCTNAGG 1 cut(s) 130
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 184
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 78, 273
BmsI GCATC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 426
Bpu10I CCTNAGC 1 cut(s) 375
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 244, 446
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 5 cut(s) 144, 195, 366, 372, 414
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 45, 128
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 2 cut(s) 45, 128
Bsp143I GATC 3 cut(s) 76, 140, 348
BspACI CCGC 4 cut(s) 236, 303, 342, 438
BspANI GGCC 2 cut(s) 45, 128
BspCNI CTCAG 5 cut(s) 143, 194, 367, 373, 415
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 78, 273
BspPI GGATC 3 cut(s) 71, 84, 148
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 3 cut(s) 76, 140, 348
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 97, 124, 178
BstDEI CTNAG 5 cut(s) 130, 181, 375, 381, 423
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 244, 446
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 79, 143, 351
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 76, 140, 348
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 76, 140
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 76, 140
Bsu36I CCTNAGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 45, 128
BtsCI GGATG 2 cut(s) 244, 446
BtsIMutI CAGTG 3 cut(s) 120, 282, 289
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 2 cut(s) 73, 214
CviJI RGCY 7 cut(s) 45, 68, 128, 274, 294, 379, 432
CviKI_1 RGCY 7 cut(s) 45, 68, 128, 274, 294, 379, 432
DdeI CTNAG 5 cut(s) 130, 181, 375, 381, 423
DpnI GATC 3 cut(s) 78, 142, 350
DpnII GATC 3 cut(s) 76, 140, 348
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 76, 217
FaiI YATR 8 cut(s) 65, 74, 84, 215, 310, 414, 435, 459
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 279, 311
FatI CATG 2 cut(s) 72, 213
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 251, 453
Fsp4HI GCNGC 1 cut(s) 306
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 2 cut(s) 45, 128
HhaI GCGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 76, 217
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 360, 419
HphI GGTGA 2 cut(s) 166, 428
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 6 cut(s) 11, 184, 196, 251, 359, 424
Hpy188III TCNNGA 2 cut(s) 374, 405
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 214, 281, 305, 411
HpyCH4III ACNGT 3 cut(s) 97, 124, 178
HpyCH4V TGCA 2 cut(s) 146, 308
HpyF3I CTNAG 5 cut(s) 130, 181, 375, 381, 423
Hsp92II CATG 2 cut(s) 76, 217
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 76, 140, 348
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 117, 162, 288, 387, 390, 393
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 25
MalI GATC 3 cut(s) 78, 142, 350
MboI GATC 3 cut(s) 76, 140, 348
MboII GAAGA 1 cut(s) 17
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 1 cut(s) 335
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 7 cut(s) 15, 56, 139, 309, 401, 418, 457
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 305
MvnI CGCG 1 cut(s) 236
NdeII GATC 3 cut(s) 76, 140, 348
NlaIII CATG 2 cut(s) 76, 217
NlaIV GGNNCC 2 cut(s) 78, 273
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 78, 273
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 2 cut(s) 76, 140
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 76, 140, 348
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 354
SetI ASST 1 cut(s) 434
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 335
SsiI CCGC 4 cut(s) 236, 303, 342, 438
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 97, 124, 178
TaqI TCGA 2 cut(s) 33, 48
TasI AATT 1 cut(s) 335
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 3 cut(s) 127, 282, 289
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 174, 191
TspRI CASTG 3 cut(s) 127, 282, 289
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.