Prupe.2G158700_v2.0.a1

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000507
Physical Location & Seq
Forward (+)
21150642 .. 21152561
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G158700.1

Sequence Viewer

Length: 468 bp
ATGCCTCTGGGAACGCTTGAAGTTCTTCTTGTTGATGCCAAAGGCCTTGACAACAATGATTTTCTGGCTGACATGGATCCCTATGTCCTTTTGACTCTAAGGACCCAAGAGAAGAAAAGCAATGTGGTCTCAGGGCAAGGATCTGCACCAGAATGGAATGAAACCTTTGTATTTACAGTCTCTGATGATGTCTCTGAACTTCATTTGAAAATAATGGATAAGGATAATTTCAGCGCAGATGATTTTGTTGGAGAAGCAACTATTTCATTAGAGCCAGTGTTCACTGAAGGCGGCATTCCACCAACTGCATACAATGTTGTCAATCAGGACAAGGAATACCGTGGAGAGATTAAAGTTGGACTCAGATTCACTCCTGAGCCTGAGCAAAACGACGGTCCATCTGGGGAATATGGTGGTTCCGAGGAGGGCTACGGTGGATGGAAACAATCGTCTTACGCAGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

156

Amino Acids

17.03

Weight (kDa)

4.14

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 291
AclWI GGATC 3 cut(s) 71, 84, 148
AcuI CTGAAG 1 cut(s) 306
AgsI TTSAA 2 cut(s) 20, 208
Alw26I GTCTC 3 cut(s) 133, 184, 196
AlwI GGATC 3 cut(s) 71, 84, 148
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 102, 395
AvaII GGWCC 2 cut(s) 102, 395
BamHI GGATCC 1 cut(s) 76
BccI CCATC 2 cut(s) 406, 432
BcoDI GTCTC 3 cut(s) 133, 184, 196
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 102, 395
BmgT120I GGNCC 2 cut(s) 102, 395
BmiI GGNNCC 3 cut(s) 78, 104, 418
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 2 cut(s) 375, 381
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 340, 420
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 340, 420
BseGI GGATG 1 cut(s) 443
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 4 cut(s) 144, 366, 372, 376
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 45
BsmAI GTCTC 3 cut(s) 133, 184, 196
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 76, 140
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 4 cut(s) 143, 367, 373, 375
BspLI GGNNCC 3 cut(s) 78, 104, 418
BspPI GGATC 3 cut(s) 71, 84, 148
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 340, 420
BssMI GATC 2 cut(s) 76, 140
Bst4CI ACNGT 4 cut(s) 178, 341, 395, 434
BstDEI CTNAG 5 cut(s) 98, 130, 362, 375, 381
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 79, 143
BstMAI GTCTC 3 cut(s) 133, 184, 196
BstMBI GATC 2 cut(s) 76, 140
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 282, 282
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 102, 395
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 45, 68, 274, 379, 429
CviKI_1 RGCY 5 cut(s) 45, 68, 274, 379, 429
DdeI CTNAG 5 cut(s) 98, 130, 362, 375, 381
DpnI GATC 2 cut(s) 78, 142
DpnII GATC 2 cut(s) 76, 140
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 102, 395
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 102
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 74, 84, 310, 411
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 1 cut(s) 292
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 45
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 3 cut(s) 94, 360, 366
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 4 cut(s) 184, 196, 365, 421
Hpy188III TCNNGA 2 cut(s) 326, 374
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 4 cut(s) 178, 341, 395, 434
HpyCH4V TGCA 2 cut(s) 146, 308
HpyF3I CTNAG 5 cut(s) 98, 130, 362, 375, 381
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 76, 140
LpnPI CCDG 8 cut(s) 50, 117, 162, 288, 311, 387, 387, 393
LweI GCATC 1 cut(s) 25
MalI GATC 2 cut(s) 78, 142
MboI GATC 2 cut(s) 76, 140
MboII GAAGA 2 cut(s) 17, 124
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 88, 354
MmeI TCCRAC 2 cut(s) 229, 337
MnlI CCTC 4 cut(s) 15, 415, 418, 454
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 294
NdeII GATC 2 cut(s) 76, 140
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 3 cut(s) 78, 104, 418
PceI AGGCCT 1 cut(s) 45
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 2 cut(s) 88, 354
PpsI GAGTC 2 cut(s) 88, 354
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 78, 104, 418
PspPI GGNCC 2 cut(s) 102, 395
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 76, 140
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 2 cut(s) 76, 140
Sau96I GGNCC 2 cut(s) 102, 395
SchI GAGTC 2 cut(s) 88, 354
SetI ASST 1 cut(s) 167
SfaNI GCATC 1 cut(s) 25
SinI GGWCC 2 cut(s) 102, 395
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 226
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 4 cut(s) 178, 341, 395, 434
TasI AATT 1 cut(s) 226
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 2 cut(s) 282, 289
TspDTI ATGAA 3 cut(s) 174, 191, 255
TspRI CASTG 2 cut(s) 282, 289
VpaK11BI GGWCC 2 cut(s) 102, 395
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.