Rh1AG245900

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000507
Physical Location & Seq
Forward (+)
45996312 .. 45999288
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG245900.1

Sequence Viewer

Length: 501 bp
ATGGCCTACGGGACTCTTGAAGTTGTTCTTGTTGATGCCAAACACCTCCACAACACTGGTTTTCTCACTAAAATGGATCCCTATGTCATTTTCTCTGTGAAGACCCAAGAGAAAATAAGCACTGTGGCCAAAGGCCAAGGATCTAACCCAGAATGGAATGAAAGCTTCTTATTCACAGTGACTGATGATGTGTCCGAACTTCGTTTGAAAATAATGGACAAAGATACCTTCACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGACCCAGCATTGTTCGTTCATGGAAGCCTTCCACCAACTTCATACAATGTTGTCAACAAGCACCAGAAATATCGCGGAGAAATCAAAATAGGACTCAATTTCACTCCTGATCCTCAGAGATCGTTTTCAGCGTCGATCGGACTTTGTACGAGGGGAAGAAGTAGGAGTTCTCGGCGACGAGCTTCTCGAGGTCGGAGATGGAGGCGGAGATTTGGTCGAGGAAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

166

Amino Acids

18.81

Weight (kDa)

10.11

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 101 3.7e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 345
AciI CCGC 3 cut(s) 234, 345, 475
AclWI GGATC 4 cut(s) 71, 84, 148, 374
AcoI YGGCCR 1 cut(s) 126
AfaI GTAC 1 cut(s) 418
AgsI TTSAA 2 cut(s) 20, 208
AluBI AGCT 2 cut(s) 165, 452
AluI AGCT 2 cut(s) 165, 452
AlwI GGATC 4 cut(s) 71, 84, 148, 374
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 456
AoxI GGCC 3 cut(s) 3, 126, 133
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 107
BccI CCATC 1 cut(s) 462
BfaI CTAG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 3 cut(s) 5, 128, 135
BsiEI CGRYCG 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 5, 128, 135
BsoBI CYCGRG 1 cut(s) 456
Bsp143I GATC 5 cut(s) 76, 140, 379, 389, 405
BspACI CCGC 3 cut(s) 234, 345, 475
BspANI GGCC 3 cut(s) 5, 128, 135
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 4 cut(s) 71, 84, 148, 374
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 5 cut(s) 76, 140, 379, 389, 405
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 124, 178
BstDEI CTNAG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 5 cut(s) 79, 143, 382, 392, 408
BstMBI GATC 5 cut(s) 76, 140, 379, 389, 405
BstMCI CGRYCG 1 cut(s) 408
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 76, 140
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 3 cut(s) 5, 128, 135
BtsIMutI CAGTG 3 cut(s) 54, 120, 183
CaiI CAGNNNCTG 1 cut(s) 182
CseI GACGC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 417
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 5, 128, 135, 165, 297, 452
CviKI_1 RGCY 6 cut(s) 5, 128, 135, 165, 297, 452
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 384
DpnI GATC 5 cut(s) 78, 142, 381, 391, 407
DpnII GATC 5 cut(s) 76, 140, 379, 389, 405
EaeI YGGCCR 1 cut(s) 126
EciI GGCGGA 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 293
FaiI YATR 3 cut(s) 84, 291, 313
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 289
FspBI CTAG 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 278
HaeIII GGCC 3 cut(s) 5, 128, 135
HgaI GACGC 1 cut(s) 390
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 13, 363
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 196, 387, 410, 465
Hpy188III TCNNGA 4 cut(s) 17, 269, 377, 456
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 406, 450
HpyAV CCTTC 3 cut(s) 238, 308, 486
HpyCH4III ACNGT 2 cut(s) 124, 178
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 5 cut(s) 76, 140, 379, 389, 405
LpnPI CCDG 5 cut(s) 42, 162, 288, 347, 390
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 178
MalI GATC 5 cut(s) 78, 142, 381, 391, 407
MboI GATC 5 cut(s) 76, 140, 379, 389, 405
MboII GAAGA 2 cut(s) 112, 438
MflI RGATCY 2 cut(s) 76, 140
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 367
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 7, 357
MmeI TCCRAC 2 cut(s) 229, 443
MnlI CCTC 7 cut(s) 56, 276, 393, 414, 452, 465, 482
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 128
MvnI CGCG 1 cut(s) 345
NdeII GATC 5 cut(s) 76, 140, 379, 389, 405
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 456
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 454
PdmI GAANNNNTTC 1 cut(s) 24
Ple19I CGATCG 1 cut(s) 408
PleI GAGTC 2 cut(s) 7, 357
PpsI GAGTC 2 cut(s) 7, 357
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 76, 140
PvuI CGATCG 1 cut(s) 408
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 1 cut(s) 71
Sau3AI GATC 5 cut(s) 76, 140, 379, 389, 405
SchI GAGTC 2 cut(s) 7, 357
SetI ASST 5 cut(s) 48, 167, 230, 454, 463
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 456
SlaI CTCGAG 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 1 cut(s) 367
SsiI CCGC 3 cut(s) 234, 345, 475
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 124, 178
TaqI TCGA 3 cut(s) 404, 457, 487
TasI AATT 1 cut(s) 367
TscAI CASTG 3 cut(s) 61, 127, 183
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 174, 278, 300
TspRI CASTG 3 cut(s) 61, 127, 183
XbaI TCTAGA 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.