Prupe.2G159000_v2.0.a1

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000507
Physical Location & Seq
Forward (+)
21168717 .. 21170602
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G159000.2

Sequence Viewer

Length: 426 bp
ATGAATTGTGTTAAAGAAATTGTACATGCAGGACAAGGATCTGCACCAGAATGGAATGAAACCTTTGTATTTACAGTCTCTGATGATGTCTCCGAACTTCATTTGAAAATAATGGAGAAGGATAATTTCAGCGCAGATGATTTTGTTGGAGAAGCAACCATTTCATTAGAGCCCATTTTCACTGAAGGTAGCATTCCACCAACTGCATATAATGTTGTCAATCAGGACAAGGAATACCGTGGAGAGATTAAAGTTGGACTCAGATTTACTCCTGAGCCTCAGCAAAATGATGGTCCATCTGGGGAATATGGAAGAAACGACAGTCCATCTGGGGGATATGGAAGAAACGATGGTCCATCTGGGGAATATGGTGGTTCAGAGGAGGGCTATGGTGGATGGAAACAATCATCTTACGCGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

4.29

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 416
AciI CCGC 1 cut(s) 416
AclWI GGATC 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 82, 94
AlwI GGATC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 293, 353
AvaII GGWCC 2 cut(s) 293, 353
BanII GRGCYC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 6 cut(s) 284, 304, 334, 344, 364, 390
BcoDI GTCTC 2 cut(s) 82, 94
Bme18I GGWCC 2 cut(s) 293, 353
BmgT120I GGNCC 2 cut(s) 293, 353
Bpu10I CCTNAGC 2 cut(s) 273, 279
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 3 cut(s) 264, 274, 293
BseRI GAGGAG 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 2 cut(s) 82, 94
BsmI GAATGC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 3 cut(s) 265, 273, 292
BspFNI CGCG 1 cut(s) 416
BspPI GGATC 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 76, 239, 323
BstAUI TGTACA 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 260, 273, 279
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 2 cut(s) 82, 94
BstMBI GATC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 29
BstUI CGCG 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 293, 353
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 26
CviJI RGCY 3 cut(s) 172, 277, 387
CviKI_1 RGCY 3 cut(s) 172, 277, 387
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 3 cut(s) 260, 273, 279
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 293, 353
Eco57I CTGAAG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 1 cut(s) 29
FaiI YATR 7 cut(s) 27, 208, 210, 309, 339, 369, 390
FatI CATG 1 cut(s) 25
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 174
GlaI GCGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 258
Hpy188I TCNGA 4 cut(s) 82, 94, 263, 379
Hpy188III TCNNGA 2 cut(s) 224, 272
HpyAV CCTTC 2 cut(s) 112, 179
HpyCH4III ACNGT 3 cut(s) 76, 239, 323
HpyCH4V TGCA 3 cut(s) 29, 44, 206
HpyF3I CTNAG 3 cut(s) 260, 273, 279
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 15, 60, 209, 285, 285, 315, 345
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 2 cut(s) 324, 354
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 4, 18, 124
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 127, 235
MnlI CCTC 4 cut(s) 288, 373, 376, 412
MseI TTAA 2 cut(s) 12, 249
MslI CAYNNNNRTG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 192
MvnI CGCG 1 cut(s) 416
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 29
NspI RCATGY 1 cut(s) 29
PctI GAATGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 293, 353
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 12, 249
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 293, 353
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 174
SetI ASST 2 cut(s) 65, 190
SinI GGWCC 2 cut(s) 293, 353
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 3 cut(s) 4, 18, 124
SsiI CCGC 1 cut(s) 416
TaaI ACNGT 3 cut(s) 76, 239, 323
TasI AATT 3 cut(s) 4, 18, 124
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 2 cut(s) 12, 249
Tru9I TTAA 2 cut(s) 12, 249
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 17, 72, 89, 153
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 293, 353
XceI RCATGY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.