Rh1AG246000

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000507
Physical Location & Seq
Forward (+)
46000555 .. 46002495
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG246000.1

Sequence Viewer

Length: 363 bp
ATGTATGATATGGGTTCAATGCTTGATTTTACAGCCAAAATGGATCCTTATGTCATTTTCACTGTCAAGACCCAAGAGAAAACAAGCACTGTGGCTCAAGGGGAAGGAACCAACCCGGAATGGAATGAAAATTTTTTATTCACAGTGACAGATGATGTGACCGAACTCCGTTTGAAAATAATGGACAAAGACACCTTCACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGAGCCACAATTGTTCACTGAAGGAAGCATTCCACCAACTTCATACAATGTTGTCAGCAAGCACCAGAAGTACCGTGGAGAGATCACAATTGGGCTCAATTTCACTCCTGATCCTGAGAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

120

Amino Acids

13.66

Weight (kDa)

4.35

Isoelectric Point (pI)

14.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 89 2.4e-19 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AclWI GGATC 3 cut(s) 38, 51, 341
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 2 cut(s) 18, 175
AlwI GGATC 3 cut(s) 38, 51, 341
ApoI RAATTY 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 190
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 333
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 45, 109
BmrFI CCNGG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 116
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 43, 318, 346
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 45, 109
BspPI GGATC 3 cut(s) 38, 51, 341
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 43, 318, 346
Bst4CI ACNGT 4 cut(s) 64, 91, 145, 311
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 310
BstKTI GATC 3 cut(s) 46, 321, 349
BstMBI GATC 3 cut(s) 43, 318, 346
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 310
BtsIMutI CAGTG 4 cut(s) 60, 87, 150, 252
Cac8I GCNNGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviJI RGCY 4 cut(s) 35, 95, 241, 331
CviKI_1 RGCY 4 cut(s) 35, 95, 241, 331
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 45, 320, 348
DpnII GATC 3 cut(s) 43, 318, 346
Eco24I GRGCYC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 333
FaiI YATR 4 cut(s) 6, 11, 51, 280
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 1 cut(s) 236
HapII CCGG 1 cut(s) 116
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 252
Hpy188III TCNNGA 4 cut(s) 67, 236, 344, 350
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 98, 205, 251
HpyCH4III ACNGT 4 cut(s) 64, 91, 145, 311
HpyF3I CTNAG 1 cut(s) 351
Kzo9I GATC 3 cut(s) 43, 318, 346
LpnPI CCDG 3 cut(s) 129, 314, 357
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 145, 157
MalI GATC 3 cut(s) 45, 320, 348
MboI GATC 3 cut(s) 43, 318, 346
MfeI CAATTG 2 cut(s) 245, 324
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 4 cut(s) 130, 245, 324, 334
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 1 cut(s) 243
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 2 cut(s) 245, 324
Mva1269I GAATGC 1 cut(s) 264
NciI CCSGG 1 cut(s) 116
NdeII GATC 3 cut(s) 43, 318, 346
NlaIV GGNNCC 2 cut(s) 45, 109
NmuCI GTSAC 2 cut(s) 145, 157
PctI GAATGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 45, 109
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
Sau3AI GATC 3 cut(s) 43, 318, 346
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 333
SetI ASST 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 4 cut(s) 130, 245, 324, 334
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 64, 91, 145, 311
TaqII GACCGA 1 cut(s) 176
TasI AATT 4 cut(s) 130, 245, 324, 334
TscAI CASTG 4 cut(s) 67, 94, 150, 259
TseFI GTSAC 2 cut(s) 145, 157
Tsp45I GTSAC 2 cut(s) 145, 157
TspDTI ATGAA 2 cut(s) 141, 267
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 4 cut(s) 67, 94, 150, 259
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.