Rorug01G0232700

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Forward (+)
33433185 .. 33436005
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232700.1

Sequence Viewer

Length: 984 bp
ATGCTGGACTACGAATGGGCCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCTAACCGACACCTTCACCACCACAACAGCATTCTGGACCACTACTCCACCACTCAGGCGGCCTTCAACAACCTTCTCCCTCCACAGCCTCACCAGCAGCAGCAGCAGTCGGCCGGCAGCGCATTCGCTCACCATTTCAGCCAGGCCCAGGCCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCGACTTCGGCGCACCACCACCACCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTTTTGATCCCCAAGAGCGAGGATGTCTGTCCCCCCGCCGACTTCGCTACGAGAATCGGGCTCAACCTCGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCAGCCGACCACGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATGAAGAAAACCGCAGCTCTCAACAGCGGCCGGAAAGTACCCGGAATTCATCATCAGACAATGTTACAAAGTCTCCGGCGGAATCTGCAGGTCATTCGTCTTCGGCTGTGACTGTGGCCGTGTCGCCGCCGCGAATGGGGTTGGATTGTTTTAGGCCAAGGCAGTATCAAAACACAACTTCTTCAGGGTCATCAAGCTCACTTTTTTTCTCAAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

327

Amino Acids

36.44

Weight (kDa)

8.81

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 177 - 250 1.4e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 842
AccII CGCG 3 cut(s) 275, 287, 895
AclWI GGATC 3 cut(s) 60, 73, 364
AcoI YGGCCR 4 cut(s) 183, 723, 791, 879
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 930
AdeI CACNNNGTG 2 cut(s) 238, 322
AfaI GTAC 1 cut(s) 802
AfiI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
AluBI AGCT 2 cut(s) 780, 960
AluI AGCT 2 cut(s) 780, 960
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 840
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 3 cut(s) 60, 73, 364
Ama87I CYCGRG 1 cut(s) 346
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 7 cut(s) 169, 172, 175, 189, 543, 663, 777
ApoI RAATTY 1 cut(s) 808
AspLEI GCGC 4 cut(s) 194, 275, 289, 301
AspS9I GGNCC 9 cut(s) 18, 109, 217, 223, 229, 349, 441, 489, 509
AsuC2I CCSGG 3 cut(s) 347, 348, 805
AsuHPI GGTGA 3 cut(s) 80, 155, 194
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 3 cut(s) 109, 441, 489
BaeGI GKGCMC 1 cut(s) 243
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 2 cut(s) 363, 426
BbsI GAAGAC 2 cut(s) 256, 855
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BccI CCATC 2 cut(s) 350, 681
BceAI ACGGC 2 cut(s) 523, 866
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 840, 874
BciT130I CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BcnI CCSGG 3 cut(s) 347, 348, 805
BcoDI GTCTC 1 cut(s) 840
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 842
Bme18I GGWCC 3 cut(s) 109, 441, 489
BmeT110I CYCGRG 1 cut(s) 346
BmgT120I GGNCC 9 cut(s) 18, 109, 217, 223, 229, 349, 441, 489, 509
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 256, 855
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpuEI CTTGAG 1 cut(s) 958
BpuMI CCSGG 3 cut(s) 347, 348, 805
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 302, 332, 820, 850
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
Bse118I RCCGGY 4 cut(s) 185, 474, 486, 741
BseBI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BseGI GGATG 3 cut(s) 49, 342, 391
BseLI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
BseMII CTCAG 3 cut(s) 140, 656, 767
BseSI GKGCMC 1 cut(s) 243
BseX3I CGGCCG 2 cut(s) 183, 791
BseXI GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 682
Bsh1236I CGCG 3 cut(s) 275, 287, 895
Bsh1285I CGRYCG 2 cut(s) 186, 794
BsiEI CGRYCG 2 cut(s) 186, 794
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 9 cut(s) 186, 347, 475, 487, 712, 742, 794, 805, 839
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 2 cut(s) 102, 194
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 3 cut(s) 243, 363, 426
Bsp143I GATC 5 cut(s) 65, 369, 513, 553, 727
BspCNI CTCAG 3 cut(s) 139, 655, 766
BspFNI CGCG 3 cut(s) 275, 287, 895
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 3 cut(s) 60, 73, 364
BsrFI RCCGGY 4 cut(s) 185, 474, 486, 741
BssAI RCCGGY 4 cut(s) 185, 474, 486, 741
BssMI GATC 5 cut(s) 65, 369, 513, 553, 727
BssT1I CCWWGG 1 cut(s) 920
Bst2UI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
Bst4CI ACNGT 3 cut(s) 622, 737, 877
Bst6I CTCTTC 2 cut(s) 254, 710
BstC8I GCNNGC 5 cut(s) 187, 271, 437, 498, 743
BstDEI CTNAG 3 cut(s) 126, 642, 753
BstDSI CCRYGG 2 cut(s) 355, 505
BstF5I GGATG 3 cut(s) 49, 342, 391
BstFNI CGCG 3 cut(s) 275, 287, 895
BstHHI GCGC 4 cut(s) 194, 275, 289, 301
BstKTI GATC 5 cut(s) 68, 372, 516, 556, 730
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 5 cut(s) 65, 369, 513, 553, 727
BstMCI CGRYCG 2 cut(s) 186, 794
BstMWI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
BstNI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 3 cut(s) 275, 287, 895
BstV1I GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BstV2I GAAGAC 2 cut(s) 256, 855
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 2 cut(s) 183, 791
BtgI CCRYGG 2 cut(s) 355, 505
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 3 cut(s) 49, 342, 391
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 5 cut(s) 187, 271, 437, 498, 743
CciI TCATGA 1 cut(s) 468
CfoI GCGC 4 cut(s) 194, 275, 289, 301
Cfr10I RCCGGY 4 cut(s) 185, 474, 486, 741
Cfr13I GGNCC 9 cut(s) 18, 109, 217, 223, 229, 349, 441, 489, 509
Cfr9I CCCGGG 1 cut(s) 346
CseI GACGC 2 cut(s) 250, 264
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 801
CviAII CATG 2 cut(s) 37, 469
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 3 cut(s) 126, 642, 753
DpnI GATC 5 cut(s) 67, 371, 515, 555, 729
DpnII GATC 5 cut(s) 65, 369, 513, 553, 727
DraIII CACNNNGTG 2 cut(s) 238, 322
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 4 cut(s) 183, 723, 791, 879
EagI CGGCCG 2 cut(s) 183, 791
Eam1104I CTCTTC 2 cut(s) 254, 710
EarI CTCTTC 2 cut(s) 254, 710
EciI GGCGGA 2 cut(s) 454, 857
EclXI CGGCCG 2 cut(s) 183, 791
Eco130I CCWWGG 1 cut(s) 920
Eco24I GRGCYC 2 cut(s) 363, 426
Eco47I GGWCC 3 cut(s) 109, 441, 489
Eco52I CGGCCG 2 cut(s) 183, 791
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
EcoT14I CCWWGG 1 cut(s) 920
EcoT38I GRGCYC 2 cut(s) 363, 426
ErhI CCWWGG 1 cut(s) 920
FaeI CATG 2 cut(s) 40, 472
FaiI YATR 2 cut(s) 38, 470
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 36, 468
FauI CCCGC 2 cut(s) 406, 428
FokI GGATG 3 cut(s) 56, 329, 398
FriOI GRGCYC 2 cut(s) 363, 426
GlaI GCGC 4 cut(s) 193, 274, 288, 300
GsaI CCCAGC 1 cut(s) 261
HapII CCGG 9 cut(s) 186, 347, 475, 487, 712, 742, 794, 805, 839
HgaI GACGC 2 cut(s) 250, 264
HhaI GCGC 4 cut(s) 194, 275, 289, 301
Hin1II CATG 2 cut(s) 40, 472
Hin6I GCGC 4 cut(s) 192, 273, 287, 299
HinP1I GCGC 4 cut(s) 192, 273, 287, 299
HincII GTYRAC 2 cut(s) 61, 639
HindII GTYRAC 2 cut(s) 61, 639
HinfI GANTC 7 cut(s) 47, 53, 417, 640, 648, 669, 845
HpaII CCGG 9 cut(s) 186, 347, 475, 487, 712, 742, 794, 805, 839
HphI GGTGA 3 cut(s) 80, 155, 194
Hpy166II GTNNAC 3 cut(s) 61, 241, 639
Hpy188I TCNGA 4 cut(s) 52, 70, 457, 820
Hpy188III TCNNGA 2 cut(s) 107, 469
Hpy8I GTNNAC 3 cut(s) 61, 241, 639
Hpy99I CGWCG 2 cut(s) 280, 741
HpyAV CCTTC 4 cut(s) 36, 95, 145, 155
HpyCH4III ACNGT 3 cut(s) 622, 737, 877
HpyCH4V TGCA 3 cut(s) 241, 663, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
HpyF3I CTNAG 3 cut(s) 126, 642, 753
Hsp92II CATG 2 cut(s) 40, 472
HspAI GCGC 4 cut(s) 192, 273, 287, 299
KroI GCCGGC 2 cut(s) 185, 741
KroNI GCCGGC 2 cut(s) 187, 743
Kzo9I GATC 5 cut(s) 65, 369, 513, 553, 727
Lsp1109I GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
LweI GCATC 1 cut(s) 518
MabI ACCWGGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 826, 871
MalI GATC 5 cut(s) 67, 371, 515, 555, 729
MboI GATC 5 cut(s) 65, 369, 513, 553, 727
MboII GAAGA 7 cut(s) 241, 256, 668, 727, 779, 855, 936
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 243, 363, 426
MluCI AATT 1 cut(s) 808
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 2 cut(s) 93, 885
MreI CGCCGGCG 1 cut(s) 741
MroNI GCCGGC 2 cut(s) 185, 741
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 9 cut(s) 186, 347, 475, 487, 712, 742, 794, 805, 839
Mva1269I GAATGC 2 cut(s) 102, 194
MvaI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
MvnI CGCG 3 cut(s) 275, 287, 895
MwoI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
NaeI GCCGGC 2 cut(s) 187, 743
NciI CCSGG 3 cut(s) 347, 348, 805
NdeII GATC 5 cut(s) 65, 369, 513, 553, 727
NgoMIV GCCGGC 2 cut(s) 185, 741
NlaIII CATG 2 cut(s) 40, 472
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 2 cut(s) 411, 562
NmuCI GTSAC 1 cut(s) 871
PagI TCATGA 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 102, 194
PdiI GCCGGC 2 cut(s) 187, 743
PfeI GAWTC 6 cut(s) 47, 53, 417, 648, 669, 845
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp6I CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 9 cut(s) 18, 109, 217, 223, 229, 349, 441, 489, 509
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
Sau3AI GATC 5 cut(s) 65, 369, 513, 553, 727
Sau96I GGNCC 9 cut(s) 18, 109, 217, 223, 229, 349, 441, 489, 509
SchI GAGTC 1 cut(s) 634
SduI GDGCHC 3 cut(s) 243, 363, 426
SetI ASST 9 cut(s) 87, 147, 240, 432, 446, 594, 782, 856, 962
SexAI ACCWGGT 1 cut(s) 234
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 849
SgrAI CRCCGGYG 1 cut(s) 741
SinI GGWCC 3 cut(s) 109, 441, 489
SmaI CCCGGG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
Sse9I AATT 1 cut(s) 808
StyI CCWWGG 1 cut(s) 920
TaaI ACNGT 3 cut(s) 622, 737, 877
TaqI TCGA 2 cut(s) 252, 333
TaqII GACCGA 1 cut(s) 22
TasI AATT 1 cut(s) 808
TauI GCSGC 5 cut(s) 134, 585, 793, 892, 895
TfiI GAWTC 6 cut(s) 47, 53, 417, 648, 669, 845
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 7 cut(s) 169, 172, 175, 189, 543, 663, 777
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 5 cut(s) 60, 457, 485, 780, 801
TspGWI ACGGA 4 cut(s) 46, 78, 310, 711
TspMI CCCGGG 1 cut(s) 346
TspRI CASTG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 3 cut(s) 109, 441, 489
XapI RAATTY 1 cut(s) 808
XmaI CCCGGG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.