Rorug01G0233100

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Reverse (-)
33514879 .. 33515085
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0233100.1

Sequence Viewer

Length: 207 bp
ATGATGTTTCTTCGTGATAGAGTTATCTTTTCAGTATGTCACTGTTATGTCAAAGCAAATGGAGTAGTCATTTGTGCGCTCTTTGCTAATTGGTGCTGGTTAGAATACATAGATTTTGTAGATAGTTTTGGTATTATTTCAGGATGTTCTCTTTATGCTTATTGTAATTTGGGGTTTAGGCTCTACATCCCCCCTTGTATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

68

Amino Acids

7.86

Weight (kDa)

6.49

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AspLEI GCGC 1 cut(s) 79
BseGI GGATG 2 cut(s) 149, 186
Bst4CI ACNGT 1 cut(s) 44
BstF5I GGATG 2 cut(s) 149, 186
BstHHI GCGC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 83
BtsCI GGATG 2 cut(s) 149, 186
BtsIMutI CAGTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 79
CviJI RGCY 1 cut(s) 181
CviKI_1 RGCY 1 cut(s) 181
FaiI YATR 4 cut(s) 37, 48, 110, 156
FokI GGATG 2 cut(s) 156, 173
GlaI GCGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 14, 141
HpyCH4III ACNGT 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HspAI GCGC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 82, 126
MaeIII GTNAC 1 cut(s) 38
MluCI AATT 2 cut(s) 88, 166
MslI CAYNNNNRTG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 45
SgeI CNNG 3 cut(s) 26, 109, 153
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 88, 166
TaaI ACNGT 1 cut(s) 44
TasI AATT 2 cut(s) 88, 166
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspRI CASTG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.