Rmu_sc0001207.1_g000095

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001207.1
OG0000507
Physical Location & Seq
Reverse (-)
391512 .. 395332
3821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001207.1_g000095.1.cds

Sequence Viewer

Length: 543 bp
atggggcttaaagaaattgaagattttgtgttcgctcgtttgaatagtactgatgctatcgggcaagatgatactgccaagttggaaagcctttctgtaaaattacagtcgtcgatcttctttggatttcatctccgctatccaaacatgggttacgggactcttgaagttattcttgttaatgccaaacacctccacaacactgattttctcactaaaatggatccctatgtcattttctctgtgaagacccaagagaaaataagcactgtggccaaaggccaaggatctaacccagaatggaatgaaagcttcttattcacagtgactgatgatgtgtccgaacttcgtttgaaaataatggacaaaggtacctttaccgcagatgattttgttggagaaacaaccattcctctagacccagcattgttcattcatggaagccttccaccaacttcatacaatgttgtcaacaagcaccagaaatatcgcggagaaatcaaaataggactcaattttactcctgatcctcagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

180

Amino Acids

20.27

Weight (kDa)

5.31

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 1 cut(s) 492
AciI CCGC 3 cut(s) 136, 381, 492
AclWI GGATC 4 cut(s) 218, 231, 295, 521
AcoI YGGCCR 1 cut(s) 273
AfaI GTAC 2 cut(s) 49, 373
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 4 cut(s) 20, 43, 167, 355
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
AlwI GGATC 4 cut(s) 218, 231, 295, 521
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 273, 280
Asp700I GAANNNNTTC 1 cut(s) 171
Asp718I GGTACC 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BalI TGGCCA 1 cut(s) 275
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 254
BfaI CTAG 1 cut(s) 416
BmcAI AGTACT 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 225, 373
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 275, 282
BshNI GGYRCC 1 cut(s) 371
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 275, 282
Bsp143I GATC 4 cut(s) 114, 223, 287, 526
BspACI CCGC 3 cut(s) 136, 381, 492
BspANI GGCC 2 cut(s) 275, 282
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 225, 373
BspPI GGATC 4 cut(s) 218, 231, 295, 521
BspT107I GGYRCC 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 4 cut(s) 114, 223, 287, 526
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 108, 271, 325
BstDEI CTNAG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 4 cut(s) 117, 226, 290, 529
BstMBI GATC 4 cut(s) 114, 223, 287, 526
BstUI CGCG 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 223, 287
BstYI RGATCY 2 cut(s) 223, 287
BsuRI GGCC 2 cut(s) 275, 282
BtsIMutI CAGTG 3 cut(s) 201, 267, 330
CaiI CAGNNNCTG 1 cut(s) 329
Csp6I GTAC 2 cut(s) 48, 372
CviAII CATG 2 cut(s) 148, 437
CviJI RGCY 6 cut(s) 7, 90, 275, 282, 312, 444
CviKI_1 RGCY 6 cut(s) 7, 90, 275, 282, 312, 444
CviQI GTAC 2 cut(s) 48, 372
DdeI CTNAG 1 cut(s) 531
DpnI GATC 4 cut(s) 116, 225, 289, 528
DpnII GATC 4 cut(s) 114, 223, 287, 526
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 151, 440
FaiI YATR 4 cut(s) 149, 231, 438, 460
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 147, 436
FspBI CTAG 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 425
HaeIII GGCC 2 cut(s) 275, 282
Hin1II CATG 2 cut(s) 151, 440
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 2 cut(s) 160, 510
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 343, 534
Hpy188III TCNNGA 3 cut(s) 164, 416, 524
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 3 cut(s) 108, 271, 325
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 2 cut(s) 151, 440
KpnI GGTACC 1 cut(s) 375
Kzo9I GATC 4 cut(s) 114, 223, 287, 526
LpnPI CCDG 4 cut(s) 309, 435, 494, 537
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 152, 325
MalI GATC 4 cut(s) 116, 225, 289, 528
MboI GATC 4 cut(s) 114, 223, 287, 526
MboII GAAGA 3 cut(s) 32, 109, 259
MflI RGATCY 2 cut(s) 223, 287
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 3 cut(s) 15, 101, 514
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 154, 504
MmeI TCCRAC 2 cut(s) 63, 376
MnlI CCTC 3 cut(s) 203, 423, 540
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 171
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 9, 180
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 275
MvnI CGCG 1 cut(s) 492
NdeII GATC 4 cut(s) 114, 223, 287, 526
NlaIII CATG 2 cut(s) 151, 440
NlaIV GGNNCC 2 cut(s) 225, 373
NmuCI GTSAC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 171
PleI GAGTC 2 cut(s) 154, 504
PpsI GAGTC 2 cut(s) 154, 504
PspFI CCCAGC 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 225, 373
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 223, 287
RsaI GTAC 2 cut(s) 49, 373
RsaNI GTAC 2 cut(s) 48, 372
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 9, 180
Sau3AI GATC 4 cut(s) 114, 223, 287, 526
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 154, 504
SetI ASST 4 cut(s) 195, 314, 373, 377
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 3 cut(s) 15, 101, 514
SsiI CCGC 3 cut(s) 136, 381, 492
SspMI CTAG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 3 cut(s) 108, 271, 325
TaqI TCGA 1 cut(s) 113
TasI AATT 3 cut(s) 15, 101, 514
TatI WGTACW 1 cut(s) 47
Tru1I TTAA 2 cut(s) 9, 180
Tru9I TTAA 2 cut(s) 9, 180
TscAI CASTG 3 cut(s) 208, 274, 330
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 119, 321, 421, 425, 447
TspRI CASTG 3 cut(s) 208, 274, 330
XbaI TCTAGA 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.