Rorug01G0232900

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Reverse (-)
33473100 .. 33473745
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232900.1

Sequence Viewer

Length: 426 bp
ATGTGCTTCAGTTCCCAGTTTCAGAAGCTTCTGACGCTATCTTGGCGCGGCGCGTCGGAGGCGATCTGGAAGTGCTCTGACGCTGTGGTTGTAGCTCGCCTGGCGGTGTGTCGGCATGGCATTCCTTTGGTTGGAATTAGTACCTTTGGAGTGCAGTTTGCTGTGGACAATGGCTTTGTTCTAGCTATCATGGAGACGGACGCACAGAGCGTGCAAAGGCAATTAACTAAGTCTGATGGGAGTAATGTTTCCATGTTGGGTCACTTGTATGATGATCTTGTTTTGAGGTTGGAGAGCCCCTCTAATCTGAAAATTGTTCACATAAGCAGAAGTGCAAATAAGGTTGCACACATTATGGCAGCAAGGGCTCTACTACTGAGCTGCAAGGTTTCTTTTATTTTTCTACTTCCCCTGCTTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

141

Amino Acids

15.45

Weight (kDa)

9.07

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 49 - 123 9.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 48, 53
AciI CCGC 2 cut(s) 48, 104
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 131
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 4 cut(s) 28, 95, 185, 381
AluI AGCT 4 cut(s) 28, 95, 185, 381
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 359, 381
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 2 cut(s) 48, 53
BanII GRGCYC 2 cut(s) 299, 370
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 368, 371
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 182
BisI GCNGC 3 cut(s) 49, 360, 382
BlsI GCNGC 3 cut(s) 50, 361, 383
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 10
BmuI ACTGGG 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 368, 371
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 48, 53
BsiHKAI GWGCWC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 77, 299, 370
Bsp143I GATC 2 cut(s) 63, 274
BspACI CCGC 2 cut(s) 48, 104
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 2 cut(s) 48, 53
BsrI ACTGG 1 cut(s) 16
BssMI GATC 2 cut(s) 63, 274
Bst2UI CCWGG 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 97, 212
BstDEI CTNAG 2 cut(s) 228, 377
BstFNI CGCG 2 cut(s) 48, 53
BstHHI GCGC 2 cut(s) 48, 53
BstKTI GATC 2 cut(s) 66, 277
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 63, 274
BstMWI GCNNNNNNNGC 5 cut(s) 34, 43, 59, 101, 365
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 2 cut(s) 48, 53
BstV1I GCAGC 2 cut(s) 368, 371
Cac8I GCNNGC 2 cut(s) 97, 212
CfoI GCGC 2 cut(s) 48, 53
CseI GACGC 4 cut(s) 42, 43, 89, 209
Csp6I GTAC 1 cut(s) 141
CviAII CATG 3 cut(s) 116, 190, 253
CviJI RGCY 7 cut(s) 28, 95, 174, 185, 297, 368, 381
CviKI_1 RGCY 7 cut(s) 28, 95, 174, 185, 297, 368, 381
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 228, 377
DpnI GATC 2 cut(s) 65, 276
DpnII GATC 2 cut(s) 63, 274
Eco24I GRGCYC 2 cut(s) 299, 370
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 299, 370
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 3 cut(s) 119, 193, 256
FaiI YATR 6 cut(s) 117, 191, 254, 270, 323, 356
FatI CATG 3 cut(s) 115, 189, 252
Fnu4HI GCNGC 3 cut(s) 49, 360, 382
FriOI GRGCYC 2 cut(s) 299, 370
Fsp4HI GCNGC 3 cut(s) 49, 360, 382
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 47, 52
GluI GCNGC 3 cut(s) 49, 360, 382
HgaI GACGC 4 cut(s) 42, 43, 89, 209
HhaI GCGC 2 cut(s) 48, 53
Hin1II CATG 3 cut(s) 119, 193, 256
Hin6I GCGC 2 cut(s) 46, 51
HinP1I GCGC 2 cut(s) 46, 51
HindIII AAGCTT 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 166, 319
Hpy188I TCNGA 6 cut(s) 24, 33, 58, 79, 235, 309
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 166, 319
Hpy99I CGWCG 1 cut(s) 58
HpyCH4V TGCA 5 cut(s) 154, 214, 335, 347, 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 43, 59, 101, 365
HpyF3I CTNAG 2 cut(s) 228, 377
Hsp92II CATG 3 cut(s) 119, 193, 256
HspAI GCGC 2 cut(s) 46, 51
Kzo9I GATC 2 cut(s) 63, 274
LpnPI CCDG 4 cut(s) 29, 52, 86, 113
Lsp1109I GCAGC 2 cut(s) 368, 371
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 65, 276
MboI GATC 2 cut(s) 63, 274
MhlI GDGCHC 3 cut(s) 77, 299, 370
MluCI AATT 3 cut(s) 135, 221, 312
MmeI TCCRAC 3 cut(s) 36, 112, 270
MnlI CCTC 3 cut(s) 52, 279, 310
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 101
MteI GCGCNGCGC 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 2 cut(s) 48, 53
MwoI GCNNNNNNNGC 5 cut(s) 34, 43, 59, 101, 365
NdeII GATC 2 cut(s) 63, 274
NlaIII CATG 3 cut(s) 119, 193, 256
NmuCI GTSAC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 120
PkrI GCNGC 3 cut(s) 50, 361, 383
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 3 cut(s) 49, 360, 382
Sau3AI GATC 2 cut(s) 63, 274
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 77, 299, 370
SetI ASST 8 cut(s) 30, 97, 146, 187, 290, 345, 383, 390
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 3 cut(s) 135, 221, 312
SsiI CCGC 2 cut(s) 48, 104
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 99
TasI AATT 3 cut(s) 135, 221, 312
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 359, 381
Tsp45I GTSAC 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 212
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.