FvH4_7g13480

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000507
Physical Location & Seq
Forward (+)
12087476 .. 12088685
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13480.t1

Sequence Viewer

Length: 402 bp
ATGGCTTATGGCACTCTTGAAGTTGTTCTCGTTGATGCCAAAAACCTCCACAACACTGCTGGTCTTCTCGGTAAAATGGATCCCTATGTCATTTTCTCTGTGAAGACCCAAGAGAAAAGAAGCACTGTGGCCAAAGGGCAAGGAGTTAACCCAGAATGGAACGAAAGCTTCTTATTCACTGTGACTGATGATGTGACCGAACTTCGTTTGAAGATCATGGACAAAGATACCTTGTCCTCTGATGATTTTGTTGGAGAAGCAACCATTCCCCTAGACCCAGCATTGTTCATTCACGGCAGCCTTCCACCGACTTCATACAATGTTGTCAACAAGCACCAGAAACATCGCGGAGAAATCAAACTTGGACTCAATTTCACTCCTGATCCTCATCAGAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

5.66

Isoelectric Point (pI)

21.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 100 9.9e-24 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 348
AclWI GGATC 3 cut(s) 74, 87, 377
AcoI YGGCCR 1 cut(s) 129
AgsI TTSAA 2 cut(s) 20, 211
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AlwI GGATC 3 cut(s) 74, 87, 377
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 131
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 56, 110
BbvI GCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 310
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 81
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 2 cut(s) 56, 110
BsaBI GATNNNNATC 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 387
BseJI GATNNNNATC 1 cut(s) 387
BseXI GCAGC 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 131
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 79, 213, 382
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 74, 87, 377
BssMI GATC 3 cut(s) 79, 213, 382
Bst4CI ACNGT 2 cut(s) 127, 181
BstFNI CGCG 1 cut(s) 348
BstKTI GATC 3 cut(s) 82, 216, 385
BstMBI GATC 3 cut(s) 79, 213, 382
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 2 cut(s) 56, 110
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 3 cut(s) 54, 123, 177
CviAII CATG 1 cut(s) 217
CviJI RGCY 4 cut(s) 5, 131, 168, 300
CviKI_1 RGCY 4 cut(s) 5, 131, 168, 300
DpnI GATC 3 cut(s) 81, 215, 384
DpnII GATC 3 cut(s) 79, 213, 382
EaeI YGGCCR 1 cut(s) 129
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 9, 87, 218, 316
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 298
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 2 cut(s) 148, 328
HindII GTYRAC 2 cut(s) 148, 328
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 366
HpaI GTTAAC 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 148, 328
Hpy188I TCNGA 2 cut(s) 241, 393
Hpy188III TCNNGA 2 cut(s) 17, 380
Hpy8I GTNNAC 2 cut(s) 148, 328
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 2 cut(s) 127, 181
Hsp92II CATG 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 79, 213, 382
LpnPI CCDG 5 cut(s) 45, 165, 291, 350, 393
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 181, 193
MalI GATC 3 cut(s) 81, 215, 384
MboI GATC 3 cut(s) 79, 213, 382
MboII GAAGA 3 cut(s) 56, 115, 223
MflI RGATCY 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 1 cut(s) 370
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 3 cut(s) 56, 247, 396
Mox20I TGGCCA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 131
MvnI CGCG 1 cut(s) 348
NdeII GATC 3 cut(s) 79, 213, 382
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 181, 193
PdmI GAANNNNTTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 299
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 79
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 3 cut(s) 79, 213, 382
SchI GAGTC 1 cut(s) 360
SetI ASST 3 cut(s) 48, 170, 233
SfaNI GCATC 1 cut(s) 25
Sse9I AATT 1 cut(s) 370
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 127, 181
TaqII GACCGA 1 cut(s) 212
TasI AATT 1 cut(s) 370
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 3 cut(s) 61, 130, 184
TseFI GTSAC 2 cut(s) 181, 193
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 2 cut(s) 181, 193
TspDTI ATGAA 2 cut(s) 277, 303
TspRI CASTG 3 cut(s) 61, 130, 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.