RLG00000028297

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000507
Physical Location & Seq
Reverse (-)
21162981 .. 21165025
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028297

Sequence Viewer

Length: 903 bp
ATGCCTCGAGGAACACTTGAAGTTGTTCTTGTTGATGCCAGAGGCCTCGACAACAATGATTTTCTCGCTAAAATATCCCCCTATGCTGTTTTAACTGTGAAGACCCAGGAGAAGAAAAGCACTGTGCTTACAGGGAAAGGATCTAACCCAGAATGGAATGAATCCTTTTTGTTCACAATCTCGGACGATGAAGTCAAGGAACTCCATCTGACAATAATGGACAAAGACAACTTCAGTGCCGATGATTTTGTTGGAGAAGCAACCATTCCTTTACTGCCAGCTTTTGTCAAAGGAACTGTTAGCCCAACTACATACAATATTGTCAATAAGGAGAAGGAATTTCATGGTGGGGTTAAACTTGGACTCACTTTCACTCCGGAGTCTGGTTTTAAGCCTGGGAGAAGCGATTTTGATTCTGGAGAACATGGTGAAGAGGGCTCTGGTGGATGGAAACAATCATCTCATGGGGAGGACATACCGGGTGGATGGAAAGAACAACCTTCTGGGGAGGAGGGACTAGGTGGAAGGAATGAACCGCCTTATGGGAGGGAGAGACCACCTTTTGGGGAGGAGAGACCGCCTTACAGGGAGGAGAGACCCCCTTTCGGGGAGGAGAGACCGCCTTACGGGCAGGAGAGGCCACCTTACGGGGAGGAGAGGCCGCCTTTCGGGGGGGAGAGGCCACCTTACGGGGAGGAGAGGCCGTCTTATGGGGAGGAGAGGCCGTCTTTTGGTGGGGAGAGGCCGTCTTTTGGTGGGGAGAGGCCACCCTACGGGGAAGAGAGACCACCCTACGGGGAAGAGAGGCCACCTTTCGGGGAGGAGAGACATGGTGGAAGGAATGAACCGCCTTATGGGGAGGAGAGACCGGGTGGATGGAAACGCTCCTCTTTCGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

301

Amino Acids

33.42

Weight (kDa)

4.84

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 104 3.4e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AbsI CCTCGAGG 1 cut(s) 6
AccB7I CCANNNNNTGG 1 cut(s) 563
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 5 cut(s) 536, 578, 620, 662, 848
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 2 cut(s) 105, 394
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 7 cut(s) 547, 568, 589, 610, 778, 820, 859
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 6
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 9 cut(s) 43, 638, 659, 680, 701, 722, 743, 764, 806
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 480, 870
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 107
BccI CCATC 4 cut(s) 213, 441, 480, 870
BceAI ACGGC 3 cut(s) 688, 709, 730
BciT130I CCWGG 2 cut(s) 107, 396
BcnI CCSGG 2 cut(s) 480, 870
BcoDI GTCTC 7 cut(s) 547, 568, 589, 610, 778, 820, 859
BfaI CTAG 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 628
BisI GCNGC 1 cut(s) 662
BlsI GCNGC 1 cut(s) 663
Bme1390I CCNGG 4 cut(s) 107, 396, 480, 870
BmeT110I CYCGRG 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 107, 396, 480, 870
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 480, 870
BsaI GGTCTC 6 cut(s) 547, 568, 589, 610, 778, 859
BsaJI CCNNGG 2 cut(s) 105, 395
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 8 cut(s) 358, 388, 689, 710, 719, 731, 740, 761
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 2 cut(s) 107, 396
BseDI CCNNGG 2 cut(s) 105, 395
BseGI GGATG 3 cut(s) 452, 491, 881
BshFI GGCC 9 cut(s) 45, 640, 661, 682, 703, 724, 745, 766, 808
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 3 cut(s) 377, 479, 869
BslFI GGGAC 1 cut(s) 528
BsmAI GTCTC 7 cut(s) 547, 568, 589, 610, 778, 820, 859
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 9 cut(s) 45, 640, 661, 682, 703, 724, 745, 766, 808
Bso31I GGTCTC 6 cut(s) 547, 568, 589, 610, 778, 859
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 440
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 5 cut(s) 536, 578, 620, 662, 848
BspANI GGCC 9 cut(s) 45, 640, 661, 682, 703, 724, 745, 766, 808
BspEI TCCGGA 1 cut(s) 376
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 6 cut(s) 547, 568, 589, 610, 778, 859
BssECI CCNNGG 2 cut(s) 105, 395
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 107, 396
Bst4CI ACNGT 3 cut(s) 97, 124, 298
Bst6I CTCTTC 3 cut(s) 426, 774, 795
BstC8I GCNNGC 1 cut(s) 279
BstF5I GGATG 3 cut(s) 452, 491, 881
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 7 cut(s) 547, 568, 589, 610, 778, 820, 859
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 628, 637
BstNI CCWGG 2 cut(s) 107, 396
BstSCI CCNGG 4 cut(s) 105, 394, 478, 868
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 9 cut(s) 45, 640, 661, 682, 703, 724, 745, 766, 808
BtsCI GGATG 3 cut(s) 452, 491, 881
BtsIMutI CAGTG 2 cut(s) 120, 241
Cac8I GCNNGC 1 cut(s) 279
CviAII CATG 4 cut(s) 344, 425, 464, 830
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 3 cut(s) 426, 774, 795
EarI CTCTTC 3 cut(s) 426, 774, 795
Eco147I AGGCCT 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 440
Eco31I GGTCTC 6 cut(s) 547, 568, 589, 610, 778, 859
Eco57I CTGAAG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 105, 394
EcoT38I GRGCYC 1 cut(s) 440
FaeI CATG 4 cut(s) 347, 428, 467, 833
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 528
FatI CATG 4 cut(s) 343, 424, 463, 829
Fnu4HI GCNGC 1 cut(s) 662
FokI GGATG 3 cut(s) 459, 498, 888
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 662
FspBI CTAG 1 cut(s) 518
GluI GCNGC 1 cut(s) 662
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 9 cut(s) 45, 640, 661, 682, 703, 724, 745, 766, 808
HapII CCGG 3 cut(s) 377, 479, 869
Hin1II CATG 4 cut(s) 347, 428, 467, 833
HinfI GANTC 4 cut(s) 161, 363, 380, 413
HpaII CCGG 3 cut(s) 377, 479, 869
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 184, 210
Hpy188III TCNNGA 2 cut(s) 377, 417
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 899
HpyAV CCTTC 4 cut(s) 328, 510, 519, 831
HpyCH4III ACNGT 3 cut(s) 97, 124, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 628, 637
Hsp92II CATG 4 cut(s) 347, 428, 467, 833
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 890
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 518
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 5 cut(s) 112, 124, 443, 791, 812
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 1 cut(s) 338
MlyI GAGTC 2 cut(s) 357, 389
MmeI TCCRAC 1 cut(s) 232
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 3 cut(s) 92, 354, 390
MspI CCGG 3 cut(s) 377, 479, 869
MspR9I CCNGG 4 cut(s) 107, 396, 480, 870
MvaI CCWGG 2 cut(s) 107, 396
MwoI GCNNNNNNNGC 2 cut(s) 628, 637
NciI CCSGG 2 cut(s) 480, 870
NdeII GATC 1 cut(s) 140
NlaIII CATG 4 cut(s) 347, 428, 467, 833
PaeR7I CTCGAG 1 cut(s) 6
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 161, 413
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 1 cut(s) 663
PleI GAGTC 2 cut(s) 357, 388
PpsI GAGTC 2 cut(s) 357, 388
Psp6I CCWGG 2 cut(s) 105, 394
PspGI CCWGG 2 cut(s) 105, 394
PspXI VCTCGAGB 1 cut(s) 6
PsuI RGATCY 1 cut(s) 140
SaqAI TTAA 3 cut(s) 92, 354, 390
SatI GCNGC 1 cut(s) 662
Sau3AI GATC 1 cut(s) 140
SchI GAGTC 2 cut(s) 357, 389
ScrFI CCNGG 4 cut(s) 107, 396, 480, 870
SduI GDGCHC 1 cut(s) 440
SetI ASST 7 cut(s) 283, 502, 523, 562, 646, 688, 814
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 338
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 5 cut(s) 536, 578, 620, 662, 848
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 518
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 105, 394, 478, 868
TaaI ACNGT 3 cut(s) 97, 124, 298
TaqI TCGA 3 cut(s) 7, 48, 894
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 2 cut(s) 161, 413
Tru1I TTAA 3 cut(s) 92, 354, 390
Tru9I TTAA 3 cut(s) 92, 354, 390
TscAI CASTG 2 cut(s) 127, 241
TspDTI ATGAA 5 cut(s) 174, 204, 332, 546, 858
TspRI CASTG 2 cut(s) 127, 241
Van91I CCANNNNNTGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.