Rh1AG246200

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000507
Physical Location & Seq
Forward (+)
46008844 .. 46010663
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG246200.1

Sequence Viewer

Length: 390 bp
ATGAATTATATTGGTGTAATTAAAGTAAAGTTGTACATATTTGCAGCTCAAGGATCTAACCCAGAATGGAATGAGACTTTTCTATTCACTATCTCGGACGATTCTGCTGACCTTCACTTGAAAATAATGGAGAAGGACAACTTCAGCGCAGATGATTATGTTGGAGAAGCAATCATTTCTCTAGAGCCAGTTTTTGAAGAAGGAAGCCTTTTGCCAACTGCATACAATGTTGTTAATCAGGAGAAGGAATATCGTGGAGGAATTAAAGTTGGACTCAAATTCACTCCCGAGGCTGAGCCTGAAGAGAGAAGTGAGTATCGTTCTGGAGAGGGCGCTGAAACAGAGGAGAGCTATGGTGGATGGAAACAATCTGCTTACGGCGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

4.34

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 18 - 70 5.7e-11 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 127, 321
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 121, 197
AluBI AGCT 2 cut(s) 47, 351
AluI AGCT 2 cut(s) 47, 351
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 2 cut(s) 149, 335
AvaI CYCGRG 1 cut(s) 287
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 1 cut(s) 45
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 1 cut(s) 53
Bsp1720I GCTNAGC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 365
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 149, 335
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 365
CfoI GCGC 2 cut(s) 149, 335
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 6 cut(s) 47, 187, 207, 293, 298, 351
CviKI_1 RGCY 6 cut(s) 47, 187, 207, 293, 298, 351
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 127, 321
Eco88I CYCGRG 1 cut(s) 287
FaiI YATR 5 cut(s) 9, 38, 159, 223, 354
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 192, 224
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 148, 334
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 336
HhaI GCGC 2 cut(s) 149, 335
Hin6I GCGC 2 cut(s) 147, 333
HinP1I GCGC 2 cut(s) 147, 333
HinfI GANTC 2 cut(s) 101, 273
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 182, 239, 287, 324
HpyAV CCTTC 4 cut(s) 122, 127, 194, 238
HpyCH4V TGCA 2 cut(s) 44, 221
HpyF3I CTNAG 1 cut(s) 294
HspAI GCGC 2 cut(s) 147, 333
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 75, 201, 224, 309, 312
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 1 cut(s) 182
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 2 cut(s) 209, 314
MflI RGATCY 1 cut(s) 53
MluCI AATT 4 cut(s) 4, 18, 261, 278
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 142, 250
MnlI CCTC 5 cut(s) 251, 283, 322, 337, 376
MseI TTAA 3 cut(s) 21, 234, 264
NdeII GATC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 21, 234, 264
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 53
SchI GAGTC 1 cut(s) 267
SetI ASST 3 cut(s) 49, 114, 353
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 4, 18, 261, 278
SspMI CTAG 1 cut(s) 182
TasI AATT 4 cut(s) 4, 18, 261, 278
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 21, 234, 264
Tru9I TTAA 3 cut(s) 21, 234, 264
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 181
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.