Rroxscaffold_4G00302170

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000507
Physical Location & Seq
Reverse (-)
22571111 .. 22573178
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302170.1

Sequence Viewer

Length: 981 bp
ATGCCTCGAGGAACACTTGAAGTTGTTCTTGTTGATGCCAGAGGCCTCGACAACAATGATTTTCTCGCTAAAATATCCCCCTATGCTGTTTTAACTGTGAAGACCCAAGAGAAGAAAAGCACTGTGCTTACAGGGAAAGGATCTAACCCAGAATGGAATGAATCCTTTCTGTTCACAATCTCGGACGATGAAGTCAAGGAACTCCATCTGACAATAATGGACAAAGATAACTTCAGTGCTGATGATTTTGTTGGAGAAGCAACCATTCCTTTACTGCCAGCTTTTGTCAAAGGAACTGTTAACCCAACTACATACAACATTGTCAATAAGAAGAAGGAATTTCATGGTGGGGTTAAACTTGGACTCACTTTCACTCCTGAGTCTGGTTTTGAGCCCGGGAGAAGCGATTTTGAATCTGGAGAACATGGTGAGGAGGGCTCTGGTGGATGGAAACAATCATCTCATGGGGAGGACATACGGGGTGGATGGAAAGAACAACCTTCTGGGGAGGTGGGACTAGGTGGAAGGAATGAACCACCTTATGGGGAGGAGAGACCGCCTTACGGTGAGGAGAGACTGCCTTATGGAGCGGAGAGACCACCTTTTGGGGAGGAGAGACTGCCTCACAGGCAGGAGGGACCACCTTTTGGAGAGGAGAGGCCGCCGTACAGGCAGGAGAGGCCACCTTATGGGGAGGAGAGGCCACCTTTTGGGGGGAGAGGCCACCTTACGGGGAGGAGAGACCACCTTACGGGGAGGAGAGGCCACCTTTCAGGGAGGAGAGACATGGTGGAAGGAATGAACCACCTTATGGGGAAGAGAGACCACCTTACGGGGAGGAGAGGCCTCCTTTCGGGGAGGAGAGACATGGTGGAAGGAATGAACCACCTTATGGGGAGGAGAGACCGGGTGGATGGAAACACTCCTCTTTCGACGAGGAGAGATAGGATGGATGGATTCTACCCAGGTATAAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

326

Amino Acids

36.46

Weight (kDa)

6.16

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 105 3.1e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AbsI CCTCGAGG 1 cut(s) 6
AccB7I CCANNNNNTGG 7 cut(s) 542, 605, 647, 689, 710, 811, 892
AccBSI CCGCTC 1 cut(s) 590
AciI CCGC 3 cut(s) 557, 590, 662
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 1 cut(s) 668
AgsI TTSAA 2 cut(s) 20, 413
AjnI CCWGG 1 cut(s) 964
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 9 cut(s) 547, 568, 589, 610, 735, 777, 816, 858, 897
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 2 cut(s) 6, 395
AoxI GGCC 7 cut(s) 43, 659, 680, 701, 721, 763, 844
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 2 cut(s) 24, 165
AspS9I GGNCC 1 cut(s) 638
AsuC2I CCSGG 3 cut(s) 396, 397, 908
AsuHPI GGTGA 2 cut(s) 440, 578
AvaI CYCGRG 2 cut(s) 6, 395
AvaII GGWCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 396, 440
BbsI GAAGAC 1 cut(s) 107
BccI CCATC 6 cut(s) 213, 441, 480, 908, 943, 947
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 966
BcnI CCSGG 3 cut(s) 396, 397, 908
BcoDI GTCTC 9 cut(s) 547, 568, 589, 610, 735, 777, 816, 858, 897
BfaI CTAG 1 cut(s) 518
BglI GCCNNNNNGGC 2 cut(s) 628, 670
BisI GCNGC 1 cut(s) 662
BlsI GCNGC 1 cut(s) 663
Bme1390I CCNGG 4 cut(s) 396, 397, 908, 966
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 2 cut(s) 6, 395
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 4 cut(s) 396, 397, 908, 966
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 607, 639
BpmI CTGGAG 1 cut(s) 438
BpuMI CCSGG 3 cut(s) 396, 397, 908
BsaI GGTCTC 5 cut(s) 547, 589, 735, 816, 897
BsaJI CCNNGG 2 cut(s) 395, 964
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
BseBI CCWGG 1 cut(s) 966
BseDI CCNNGG 2 cut(s) 395, 964
BseGI GGATG 5 cut(s) 452, 491, 919, 954, 958
BseMII CTCAG 1 cut(s) 369
BshFI GGCC 7 cut(s) 45, 661, 682, 703, 723, 765, 846
BsiHKCI CYCGRG 2 cut(s) 6, 395
BsiSI CCGG 2 cut(s) 396, 907
BslFI GGGAC 2 cut(s) 528, 651
BsmAI GTCTC 9 cut(s) 547, 568, 589, 610, 735, 777, 816, 858, 897
BsmFI GGGAC 2 cut(s) 528, 651
BsnI GGCC 7 cut(s) 45, 661, 682, 703, 723, 765, 846
Bso31I GGTCTC 5 cut(s) 547, 589, 735, 816, 897
BsoBI CYCGRG 2 cut(s) 6, 395
Bsp1286I GDGCHC 2 cut(s) 396, 440
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 3 cut(s) 557, 590, 662
BspANI GGCC 7 cut(s) 45, 661, 682, 703, 723, 765, 846
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 5 cut(s) 547, 589, 735, 816, 897
BsrBI CCGCTC 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 395, 964
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 4 cut(s) 97, 124, 298, 566
Bst6I CTCTTC 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 5 cut(s) 452, 491, 919, 954, 958
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 9 cut(s) 547, 568, 589, 610, 735, 777, 816, 858, 897
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 3 cut(s) 628, 670, 679
BstNI CCWGG 1 cut(s) 966
BstSCI CCNGG 4 cut(s) 394, 395, 906, 964
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 7 cut(s) 45, 661, 682, 703, 723, 765, 846
BtsCI GGATG 5 cut(s) 452, 491, 919, 954, 958
BtsIMutI CAGTG 2 cut(s) 120, 241
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 638
Cfr9I CCCGGG 1 cut(s) 395
Csp6I GTAC 1 cut(s) 667
CviAII CATG 5 cut(s) 344, 425, 464, 787, 868
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Eco147I AGGCCT 2 cut(s) 45, 846
Eco24I GRGCYC 2 cut(s) 396, 440
Eco31I GGTCTC 5 cut(s) 547, 589, 735, 816, 897
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 6, 395
EcoRII CCWGG 1 cut(s) 964
EcoT38I GRGCYC 2 cut(s) 396, 440
FaeI CATG 5 cut(s) 347, 428, 467, 790, 871
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 528, 651
FatI CATG 5 cut(s) 343, 424, 463, 786, 867
Fnu4HI GCNGC 1 cut(s) 662
FokI GGATG 5 cut(s) 459, 498, 926, 961, 965
FriOI GRGCYC 2 cut(s) 396, 440
Fsp4HI GCNGC 1 cut(s) 662
FspBI CTAG 1 cut(s) 518
GluI GCNGC 1 cut(s) 662
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 7 cut(s) 45, 661, 682, 703, 723, 765, 846
HapII CCGG 2 cut(s) 396, 907
Hin1II CATG 5 cut(s) 347, 428, 467, 790, 871
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 5 cut(s) 161, 363, 380, 413, 957
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 2 cut(s) 396, 907
HphI GGTGA 2 cut(s) 440, 578
Hpy166II GTNNAC 2 cut(s) 174, 301
Hpy188I TCNGA 2 cut(s) 184, 210
Hpy188III TCNNGA 2 cut(s) 377, 417
Hpy8I GTNNAC 2 cut(s) 174, 301
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 5 cut(s) 328, 510, 519, 788, 869
HpyCH4III ACNGT 4 cut(s) 97, 124, 298, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 628, 670, 679
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 5 cut(s) 347, 428, 467, 790, 871
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 587
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 518
MalI GATC 1 cut(s) 142
MbiI CCGCTC 1 cut(s) 590
MboI GATC 1 cut(s) 140
MboII GAAGA 4 cut(s) 112, 124, 343, 829
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 396, 440
MluCI AATT 1 cut(s) 338
MlyI GAGTC 2 cut(s) 357, 389
MmeI TCCRAC 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 24, 165
MseI TTAA 3 cut(s) 92, 300, 354
MspI CCGG 2 cut(s) 396, 907
MspR9I CCNGG 4 cut(s) 396, 397, 908, 966
MvaI CCWGG 1 cut(s) 966
MwoI GCNNNNNNNGC 3 cut(s) 628, 670, 679
NciI CCSGG 3 cut(s) 396, 397, 908
NdeII GATC 1 cut(s) 140
NlaIII CATG 5 cut(s) 347, 428, 467, 790, 871
NlaIV GGNNCC 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 6
PceI AGGCCT 2 cut(s) 45, 846
PdmI GAANNNNTTC 2 cut(s) 24, 165
PfeI GAWTC 3 cut(s) 161, 413, 957
PflMI CCANNNNNTGG 7 cut(s) 542, 605, 647, 689, 710, 811, 892
PkrI GCNGC 1 cut(s) 663
PleI GAGTC 2 cut(s) 357, 388
PpsI GAGTC 2 cut(s) 357, 388
Psp6I CCWGG 1 cut(s) 964
PspGI CCWGG 1 cut(s) 964
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 6
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SaqAI TTAA 3 cut(s) 92, 300, 354
SatI GCNGC 1 cut(s) 662
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 2 cut(s) 357, 389
ScrFI CCNGG 4 cut(s) 396, 397, 908, 966
SduI GDGCHC 2 cut(s) 396, 440
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 6
SmaI CCCGGG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 338
SseBI AGGCCT 2 cut(s) 45, 846
SsiI CCGC 3 cut(s) 557, 590, 662
SspMI CTAG 1 cut(s) 518
StuI AGGCCT 2 cut(s) 45, 846
StyD4I CCNGG 4 cut(s) 394, 395, 906, 964
TaaI ACNGT 4 cut(s) 97, 124, 298, 566
TaqI TCGA 3 cut(s) 7, 48, 932
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 3 cut(s) 161, 413, 957
Tru1I TTAA 3 cut(s) 92, 300, 354
Tru9I TTAA 3 cut(s) 92, 300, 354
TscAI CASTG 2 cut(s) 127, 241
TspDTI ATGAA 6 cut(s) 174, 204, 332, 546, 815, 896
TspMI CCCGGG 1 cut(s) 395
TspRI CASTG 2 cut(s) 127, 241
Van91I CCANNNNNTGG 7 cut(s) 542, 605, 647, 689, 710, 811, 892
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 6
XmaI CCCGGG 1 cut(s) 395
XmnI GAANNNNTTC 2 cut(s) 24, 165
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.