Rh1CG229500

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000507
Physical Location & Seq
Forward (+)
48442296 .. 48449091
6796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG229500.1

Sequence Viewer

Length: 459 bp
ATGGCTTATGGGACGCTTGAAGTTGTTCTTGTTAATGCTAAAGGCCTCCACAACACTGATTTTCTCTCAGCTAAAATGGATCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAATCACTGTTGCCAAAGGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCACTTGAAAATAATGGATGAAGACGCCTTTACCGCTGATGATTATGTTGGAGAAGCAACCATTTCTTTAGAGCCAGTGTTCAATGTAGGAATTGTTCCACCAACTGCGTACAACGTTGTCAACAAGGACCAGGAATATCATGGGGAGATCAAAATTGGACTCAATTTCTCTCCTGAGCCGGAGATGAACAGCTTCTGTTCAGGACACTATGGGGGTGTTGAGGATTATGGTGGATGGAAAGAATCAACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

152

Amino Acids

16.84

Weight (kDa)

4.49

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 94 6.1e-20 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AclI AACGTT 1 cut(s) 318
AclWI GGATC 3 cut(s) 74, 87, 151
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 4 cut(s) 20, 103, 211, 286
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 3 cut(s) 71, 168, 396
AluI AGCT 3 cut(s) 71, 168, 396
AlwI GGATC 3 cut(s) 74, 87, 151
AlwNI CAGNNNCTG 1 cut(s) 399
AoxI GGCC 1 cut(s) 43
Asp700I GAANNNNTTC 2 cut(s) 24, 395
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 169, 175
AvaII GGWCC 1 cut(s) 331
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 110, 231
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 110, 231
Bpu10I CCTNAGC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 226, 443
BseMII CTCAG 2 cut(s) 81, 369
BseNI ACTGG 1 cut(s) 278
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 79, 143, 351
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 80, 370
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 74, 87, 151
BsrI ACTGG 1 cut(s) 278
BssMI GATC 3 cut(s) 79, 143, 351
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 127, 181
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 67, 378
BstF5I GGATG 2 cut(s) 226, 443
BstKTI GATC 3 cut(s) 82, 146, 354
BstMBI GATC 3 cut(s) 79, 143, 351
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 110, 231
BstX2I RGATCY 2 cut(s) 79, 143
BstYI RGATCY 2 cut(s) 79, 143
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 226, 443
BtsIMutI CAGTG 3 cut(s) 54, 123, 285
CaiI CAGNNNCTG 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 2 cut(s) 22, 236
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 156, 344
CviJI RGCY 7 cut(s) 5, 45, 71, 168, 277, 382, 396
CviKI_1 RGCY 7 cut(s) 5, 45, 71, 168, 277, 382, 396
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 67, 378
DpnI GATC 3 cut(s) 81, 145, 353
DpnII GATC 3 cut(s) 79, 143, 351
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 159, 347
FaiI YATR 7 cut(s) 9, 87, 157, 249, 345, 414, 432
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 155, 343
FokI GGATG 2 cut(s) 233, 450
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 383
HgaI GACGC 2 cut(s) 22, 236
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 159, 347
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 2 cut(s) 363, 446
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 169, 175
Hpy166II GTNNAC 2 cut(s) 177, 325
Hpy188I TCNGA 2 cut(s) 148, 199
Hpy188III TCNNGA 2 cut(s) 377, 405
Hpy8I GTNNAC 2 cut(s) 177, 325
HpyCH4III ACNGT 2 cut(s) 127, 181
HpyCH4IV ACGT 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 67, 378
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 159, 347
Kzo9I GATC 3 cut(s) 79, 143, 351
LpnPI CCDG 7 cut(s) 165, 291, 320, 347, 390, 390, 396
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 81, 145, 353
MboI GATC 3 cut(s) 79, 143, 351
MboII GAAGA 3 cut(s) 115, 127, 236
MflI RGATCY 2 cut(s) 79, 143
MluCI AATT 3 cut(s) 294, 357, 367
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 2 cut(s) 56, 418
MroXI GAANNNNTTC 2 cut(s) 24, 395
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 3 cut(s) 79, 143, 351
NlaIII CATG 2 cut(s) 159, 347
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 24, 395
PfeI GAWTC 1 cut(s) 446
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 331
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PstNI CAGNNNCTG 1 cut(s) 399
PsuI RGATCY 2 cut(s) 79, 143
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 3 cut(s) 79, 143, 351
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 335
SetI ASST 4 cut(s) 73, 170, 321, 398
SinI GGWCC 1 cut(s) 331
Sse9I AATT 3 cut(s) 294, 357, 367
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 1 cut(s) 237
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 127, 181
TaiI ACGT 1 cut(s) 321
TasI AATT 3 cut(s) 294, 357, 367
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 61, 130, 285
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 177, 237, 404
TspRI CASTG 3 cut(s) 61, 130, 285
VpaK11BI GGWCC 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmnI GAANNNNTTC 2 cut(s) 24, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.