Rw0G014880

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00664
OG0000507
Physical Location & Seq
Forward (+)
11001 .. 19283
8283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014880.1

Sequence Viewer

Length: 429 bp
ATGGCTTATGGGACGCTTGAAGTTGTTCTTGTTAATGCTAAAGGCCTCCACAACACTGATTTTCTCTCTAAAATGGATCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAACACTGTTGCCAAAGGCCAAGGATCTAACCCAAAATGGAATGAAAGCTTCTTATTCACAGTGACTGATGATGTGTCCGAACTCCGTTTGAAAATAATGGACAAAGATACCTTCACCGCAGATGATTTTGTTGGAGAAGCAACCCTTCCACCAACTTCATACAATGTTGTCAACAAGCACCAGAAATATCGCGGAGAAATCAAAATAGGACTCAATTTCACTCCTGACCCTCAGGTACTATCACTAATCAAAAGGGCCTCTTTATATAGAGGATTACAAGACATAGAATCAGAGTTGTACAAGGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

142

Amino Acids

16.17

Weight (kDa)

6.74

Isoelectric Point (pI)

21.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 101 4.9e-23 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 309
AciI CCGC 2 cut(s) 234, 309
AclWI GGATC 3 cut(s) 71, 84, 148
AfaI GTAC 2 cut(s) 354, 416
AgsI TTSAA 3 cut(s) 20, 100, 208
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AlwI GGATC 3 cut(s) 71, 84, 148
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 3 cut(s) 43, 133, 372
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 348
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 3 cut(s) 45, 135, 374
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 45, 135, 374
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 2 cut(s) 76, 140
BspACI CCGC 2 cut(s) 234, 309
BspANI GGCC 3 cut(s) 45, 135, 374
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 3 cut(s) 71, 84, 148
BsrGI TGTACA 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 76, 140
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 124, 178
BstAUI TGTACA 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 348
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 2 cut(s) 79, 143
BstMBI GATC 2 cut(s) 76, 140
BstUI CGCG 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 3 cut(s) 45, 135, 374
BtsIMutI CAGTG 3 cut(s) 54, 120, 183
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 353, 415
CviJI RGCY 5 cut(s) 5, 45, 135, 165, 374
CviKI_1 RGCY 5 cut(s) 5, 45, 135, 165, 374
CviQI GTAC 2 cut(s) 353, 415
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 78, 142
DpnII GATC 2 cut(s) 76, 140
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 6 cut(s) 9, 84, 277, 382, 384, 401
FalI AAGNNNNNCTT 6 cut(s) 12, 44, 246, 278, 361, 393
FaqI GGGAC 1 cut(s) 25
HaeIII GGCC 3 cut(s) 45, 135, 374
HgaI GACGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 327, 404
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 196, 409
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 238, 272
HpyCH4III ACNGT 2 cut(s) 124, 178
HpyF3I CTNAG 1 cut(s) 348
Kzo9I GATC 2 cut(s) 76, 140
LpnPI CCDG 3 cut(s) 311, 335, 354
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 78, 142
MboI GATC 2 cut(s) 76, 140
MboII GAAGA 2 cut(s) 112, 124
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 4 cut(s) 56, 357, 380, 385
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 33
MvnI CGCG 1 cut(s) 309
NdeII GATC 2 cut(s) 76, 140
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 178
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 404
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 76, 140
RsaI GTAC 2 cut(s) 354, 416
RsaNI GTAC 2 cut(s) 353, 415
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 2 cut(s) 76, 140
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 321
SetI ASST 3 cut(s) 167, 230, 354
Sse9I AATT 1 cut(s) 331
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 2 cut(s) 234, 309
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 124, 178
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 61, 127, 183
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 174, 264
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 3 cut(s) 61, 127, 183
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.