Prupe.2G158800_v2.0.a1

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000507
Physical Location & Seq
Forward (+)
21153120 .. 21155263
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G158800.1

Sequence Viewer

Length: 528 bp
ATGCCTCTGGGAACGCTTGAAGTTCTTCTTGTTGATGCCAAAGGCCTCGACAACAATGATTTTCTCGCTGACATGGATCCCTATGTCCTTTTGACTCTAAGGACCCAAGAGAAGAAAAGCAATGTGGTCTCAGGGCAAGGATCTGCACCAGAATGGAATGAAACCTTTGTATTTACAGTCTCTGATGATGTCTCCGAACTTCATTTGAAAATAATGGAAAAGGATAATTTCAGCGCAGACGATTTTGTTGGAGAAGCAACCATTTCATTAGAGCCCATTTTCACTGAAGGTAGCATTCCACCAACTGCATATAATGTTGTAAATCAGGACAAAGAATACCGTGGAGAGATTAAAGTTGGACTCAGATTCACTCCTGAGCCTGAGCAAAACGAGGGTGCATCTGGGGAATATGGAAGAAACGACGGTCCATCTGGGGGATATGGAAGAAACGACGGTCCATCTGGGGAATATGGTGGTTCCGAGGAGGGCTATGGTGGATGGAAACAATCATCTTACGCTGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

176

Amino Acids

19.07

Weight (kDa)

4.2

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 71, 84, 148
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 2 cut(s) 20, 208
Alw26I GTCTC 3 cut(s) 133, 184, 196
AlwI GGATC 3 cut(s) 71, 84, 148
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 102, 425, 455
AvaII GGWCC 3 cut(s) 102, 425, 455
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 3 cut(s) 436, 466, 492
BcoDI GTCTC 3 cut(s) 133, 184, 196
Bme18I GGWCC 3 cut(s) 102, 425, 455
BmgT120I GGNCC 3 cut(s) 102, 425, 455
BmiI GGNNCC 3 cut(s) 78, 104, 478
BmsI GCATC 2 cut(s) 25, 407
Bpu10I CCTNAGC 3 cut(s) 375, 381, 519
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 340, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 340, 480
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 5 cut(s) 144, 366, 372, 376, 510
BseRI GAGGAG 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 3 cut(s) 133, 184, 196
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 76, 140
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 5 cut(s) 143, 367, 373, 375, 511
BspLI GGNNCC 3 cut(s) 78, 104, 478
BspPI GGATC 3 cut(s) 71, 84, 148
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 340, 480
BssMI GATC 2 cut(s) 76, 140
Bst4CI ACNGT 4 cut(s) 178, 341, 425, 455
BstDEI CTNAG 6 cut(s) 98, 130, 362, 375, 381, 519
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 503
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 79, 143
BstMAI GTCTC 3 cut(s) 133, 184, 196
BstMBI GATC 2 cut(s) 76, 140
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 102, 425, 455
CviAII CATG 1 cut(s) 73
CviJI RGCY 4 cut(s) 45, 274, 379, 489
CviKI_1 RGCY 4 cut(s) 45, 274, 379, 489
DdeI CTNAG 6 cut(s) 98, 130, 362, 375, 381, 519
DpnI GATC 2 cut(s) 78, 142
DpnII GATC 2 cut(s) 76, 140
Eco147I AGGCCT 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 3 cut(s) 102, 425, 455
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 1 cut(s) 76
FaiI YATR 8 cut(s) 74, 84, 310, 312, 411, 441, 471, 492
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 510
FriOI GRGCYC 1 cut(s) 276
GlaI GCGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 45
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 3 cut(s) 94, 360, 366
Hpy188I TCNGA 4 cut(s) 184, 196, 365, 481
Hpy188III TCNNGA 2 cut(s) 326, 374
Hpy99I CGWCG 2 cut(s) 425, 455
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 4 cut(s) 178, 341, 425, 455
HpyCH4V TGCA 3 cut(s) 146, 308, 398
HpyF3I CTNAG 6 cut(s) 98, 130, 362, 375, 381, 519
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 76, 140
LpnPI CCDG 8 cut(s) 117, 162, 311, 387, 387, 393, 417, 447
LweI GCATC 2 cut(s) 25, 407
MalI GATC 2 cut(s) 78, 142
MboI GATC 2 cut(s) 76, 140
MboII GAAGA 4 cut(s) 17, 124, 426, 456
MflI RGATCY 2 cut(s) 76, 140
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 88, 354
MmeI TCCRAC 2 cut(s) 229, 337
MnlI CCTC 6 cut(s) 15, 56, 385, 475, 478, 514
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 294
NdeII GATC 2 cut(s) 76, 140
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 3 cut(s) 78, 104, 478
PceI AGGCCT 1 cut(s) 45
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 366
PleI GAGTC 2 cut(s) 88, 354
PpsI GAGTC 2 cut(s) 88, 354
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 78, 104, 478
PspPI GGNCC 3 cut(s) 102, 425, 455
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 76, 140
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 351
Sau3AI GATC 2 cut(s) 76, 140
Sau96I GGNCC 3 cut(s) 102, 425, 455
SchI GAGTC 2 cut(s) 88, 354
SduI GDGCHC 1 cut(s) 276
SetI ASST 2 cut(s) 167, 292
SfaNI GCATC 2 cut(s) 25, 407
SinI GGWCC 3 cut(s) 102, 425, 455
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 226
SseBI AGGCCT 1 cut(s) 45
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 4 cut(s) 178, 341, 425, 455
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 226
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 174, 191, 255
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 3 cut(s) 102, 425, 455
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.