Rorug01G0232500

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Reverse (-)
33423946 .. 33424215
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232500.1

Sequence Viewer

Length: 270 bp
ATGGCAGACGTAGTTTTATCACCAGCTTTGCAAGTGATCTTTGACAGAGTAGCATCCCCAGTCCTACAAAAGCTTGCTGATATCTGGGACATGAAGGACAACCTCCAGAGCCTACAACATGCCTTGGTCATGGTTCAAGCTGTTCTTGAAGATGCAGAGGAGCAACAACTGACGAACAAAGCCGTCCGGCTTTGGCTGTCGAAGCTCAAGAACGCAGCTCATGATGCTTGTTGGAGAGGAAAGATCCCACATTGGAAAAGTGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

6.82

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 76 9.7e-17 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AgsI TTSAA 2 cut(s) 137, 149
AluBI AGCT 5 cut(s) 26, 73, 140, 205, 218
AluI AGCT 5 cut(s) 26, 73, 140, 205, 218
AlwI GGATC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 12
BbvI GCAGC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 3 cut(s) 62, 142, 214
BmuI ACTGGG 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 36, 243
BspHI TCATGA 1 cut(s) 220
BspPI GGATC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 36, 243
BssT1I CCWWGG 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 75
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 2 cut(s) 39, 246
BstMBI GATC 2 cut(s) 36, 243
BstMWI GCNNNNNNNGC 2 cut(s) 202, 224
BstNSI RCATGY 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 220
CviAII CATG 4 cut(s) 91, 119, 130, 221
CviJI RGCY 9 cut(s) 26, 73, 111, 140, 182, 190, 196, 205, 218
CviKI_1 RGCY 9 cut(s) 26, 73, 111, 140, 182, 190, 196, 205, 218
DpnI GATC 2 cut(s) 38, 245
DpnII GATC 2 cut(s) 36, 243
Eco130I CCWWGG 1 cut(s) 123
Eco32I GATATC 1 cut(s) 82
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 94, 122, 133, 224
FaiI YATR 4 cut(s) 92, 120, 131, 222
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 90, 118, 129, 220
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 89
HapII CCGG 1 cut(s) 187
Hin1II CATG 4 cut(s) 94, 122, 133, 224
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 12
Hpy188III TCNNGA 4 cut(s) 106, 146, 208, 221
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 31, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 224
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 4 cut(s) 94, 122, 133, 224
Kzo9I GATC 2 cut(s) 36, 243
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 36, 70, 72, 119, 200
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 3 cut(s) 62, 142, 214
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 38, 245
MboI GATC 2 cut(s) 36, 243
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 113, 151, 230
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 202, 224
NdeII GATC 2 cut(s) 36, 243
NlaIII CATG 4 cut(s) 94, 122, 133, 224
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 122
PagI TCATGA 1 cut(s) 220
PkrI GCNGC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 243
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 36, 243
SetI ASST 7 cut(s) 12, 28, 75, 105, 142, 207, 220
SfaNI GCATC 3 cut(s) 62, 142, 214
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 200
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 107
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.