RchiOBHm_Chr1g0353011

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000507
Physical Location & Seq
Forward (+)
46356704 .. 46358642
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57866

Sequence Viewer

Length: 477 bp
ATGCCTATTGGGACACTTGAAGTTCTTCTTGTTGATGCCAAAGGCCTCGACAACAATGACTTTATGGCTGACATGGACCCCTATGTCCTTTTGACTGTAAATACCCAAGAGAAGAAAAGCACTGTGGTTTCAGCTCAAGGATCTAACCCAGAATGGAATGAGACTTTTCTATTCACTATCTCGGACGATTCTGCTGACCTTCACTTGAAAATAATGGAGAAGGACAACTTCAGCGCAGATGATTATGTTGGAGAAGCAATCATTTCTCTAGAGCCAGTTTTTGAAGAAGGAAGCCTTTTGCCAACTGCATACAATGTTGTTAATCAGGAGAAGGAATATCGTGGAGGAATTAAAGTTGGACTCAAATTCACTCCTGAGGCTGAGCCTGAAGAGAGAAGTGAGTATCGTTCTGGAGAGGGCGCTGAAACAGAGGAGAGCTATGGTGGATGGAAACAATCTGCTTATGGCGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

4.17

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 99 4e-21 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 214, 408
AgsI TTSAA 3 cut(s) 20, 208, 284
AluBI AGCT 2 cut(s) 134, 438
AluI AGCT 2 cut(s) 134, 438
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 148
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 2 cut(s) 236, 422
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 375
BccI CCATC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 423
BlpI GCTNAGC 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 366, 372
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 446
BshFI GGCC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 140
Bsp1720I GCTNAGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 367, 373
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 275
BssMI GATC 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 97, 124
Bst6I CTCTTC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 375, 381
BstF5I GGATG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 236, 422
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 2 cut(s) 236, 422
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 1 cut(s) 73
CviJI RGCY 8 cut(s) 45, 68, 134, 274, 294, 380, 385, 438
CviKI_1 RGCY 8 cut(s) 45, 68, 134, 274, 294, 380, 385, 438
DdeI CTNAG 2 cut(s) 375, 381
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 214, 408
Eco81I CCTNAGG 1 cut(s) 375
FaeI CATG 1 cut(s) 76
FaiI YATR 7 cut(s) 65, 74, 84, 246, 310, 441, 465
FalI AAGNNNNNCTT 6 cut(s) 12, 44, 212, 244, 279, 311
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 459
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 235, 421
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 45
HhaI GCGC 2 cut(s) 236, 422
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 2 cut(s) 234, 420
HinP1I GCGC 2 cut(s) 234, 420
HinfI GANTC 2 cut(s) 188, 360
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 269, 326, 374, 411
HpyAV CCTTC 4 cut(s) 209, 214, 281, 325
HpyCH4III ACNGT 2 cut(s) 97, 124
HpyCH4V TGCA 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 375, 381
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 2 cut(s) 234, 420
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 162, 288, 311, 387, 396, 399
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 269
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 4 cut(s) 17, 124, 296, 401
MflI RGATCY 1 cut(s) 140
MluCI AATT 2 cut(s) 348, 365
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 2 cut(s) 229, 337
MnlI CCTC 6 cut(s) 56, 338, 370, 409, 424, 463
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 321, 351
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 140
SaqAI TTAA 2 cut(s) 321, 351
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 354
SetI ASST 3 cut(s) 136, 201, 440
SfaNI GCATC 1 cut(s) 25
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 2 cut(s) 348, 365
SseBI AGGCCT 1 cut(s) 45
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 2 cut(s) 97, 124
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 348, 365
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 321, 351
Tru9I TTAA 2 cut(s) 321, 351
TscAI CASTG 1 cut(s) 127
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.