Rorug01G0232800

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Reverse (-)
33460448 .. 33461343
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232800.1

Sequence Viewer

Length: 723 bp
ATGTATTCCTCGATTTCCACATCCTCTCACCCCATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

240

Amino Acids

25.7

Weight (kDa)

4.76

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 591
AccB7I CCANNNNNTGG 1 cut(s) 416
AccIII TCCGGA 1 cut(s) 707
AciI CCGC 2 cut(s) 80, 657
AclI AACGTT 1 cut(s) 678
AclWI GGATC 6 cut(s) 333, 381, 394, 414, 427, 462
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 1 cut(s) 331
AfeI AGCGCT 1 cut(s) 628
AfiI CCNNNNNNNGG 2 cut(s) 416, 578
AgsI TTSAA 1 cut(s) 554
AhlI ACTAGT 2 cut(s) 317, 446
AjnI CCWGG 1 cut(s) 543
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 6 cut(s) 70, 140, 202, 413, 691, 713
AluI AGCT 6 cut(s) 70, 140, 202, 413, 691, 713
Alw21I GWGCWC 3 cut(s) 72, 579, 693
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 575
AlwI GGATC 6 cut(s) 333, 381, 394, 414, 427, 462
Ama87I CYCGRG 1 cut(s) 264
Aor13HI TCCGGA 1 cut(s) 707
Aor51HI AGCGCT 1 cut(s) 628
AoxI GGCC 1 cut(s) 407
ApaLI GTGCAC 1 cut(s) 575
ApeKI GCWGC 3 cut(s) 137, 296, 713
ArsI GACNNNNNNTTYG 4 cut(s) 386, 418, 419, 451
Asp700I GAANNNNTTC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 3 cut(s) 360, 407, 441
AsuHPI GGTGA 2 cut(s) 20, 533
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 2 cut(s) 360, 441
BaeGI GKGCMC 2 cut(s) 309, 579
BamHI GGATCC 2 cut(s) 386, 419
BanII GRGCYC 3 cut(s) 72, 265, 693
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 3 cut(s) 72, 579, 693
BbvI GCAGC 3 cut(s) 149, 283, 700
BccI CCATC 3 cut(s) 398, 455, 712
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 2 cut(s) 317, 446
BfaI CTAG 3 cut(s) 318, 447, 721
BfoI RGCGCY 1 cut(s) 630
BglII AGATCT 1 cut(s) 189
BisI GCNGC 3 cut(s) 138, 297, 714
BlpI GCTNAGC 1 cut(s) 692
BlsI GCNGC 3 cut(s) 139, 298, 715
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 2 cut(s) 360, 441
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 3 cut(s) 360, 407, 441
BmiI GGNNCC 7 cut(s) 93, 248, 361, 388, 421, 442, 490
BmrFI CCNGG 1 cut(s) 545
BpmI CTGGAG 3 cut(s) 182, 285, 525
Bpu10I CCTNAGC 1 cut(s) 652
Bpu1102I GCTNAGC 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 615
BsaWI WCCGGW 1 cut(s) 707
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 578
Bse1I ACTGG 6 cut(s) 208, 302, 337, 370, 379, 508
BseAI TCCGGA 1 cut(s) 707
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 3 cut(s) 20, 515, 704
BseLI CCNNNNNNNGG 2 cut(s) 416, 578
BseMII CTCAG 2 cut(s) 666, 706
BseNI ACTGG 6 cut(s) 208, 302, 337, 370, 379, 508
BseRI GAGGAG 3 cut(s) 131, 546, 549
BseSI GKGCMC 2 cut(s) 309, 579
BseXI GCAGC 3 cut(s) 149, 283, 700
BshFI GGCC 1 cut(s) 409
BsiHKAI GWGCWC 3 cut(s) 72, 579, 693
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 708
BslI CCNNNNNNNGG 2 cut(s) 416, 578
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 5 cut(s) 72, 265, 309, 579, 693
Bsp13I TCCGGA 1 cut(s) 707
Bsp143I GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
Bsp1720I GCTNAGC 1 cut(s) 692
BspACI CCGC 2 cut(s) 80, 657
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 665, 705
BspEI TCCGGA 1 cut(s) 707
BspLI GGNNCC 7 cut(s) 93, 248, 361, 388, 421, 442, 490
BspPI GGATC 6 cut(s) 333, 381, 394, 414, 427, 462
BsrI ACTGG 6 cut(s) 208, 302, 337, 370, 379, 508
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
BssNI GRCGYC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 176, 411
BstDEI CTNAG 2 cut(s) 652, 692
BstEII GGTNACC 2 cut(s) 596, 659
BstF5I GGATG 3 cut(s) 20, 515, 704
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 8 cut(s) 192, 341, 349, 389, 422, 470, 478, 541
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 545
BstPI GGTNACC 2 cut(s) 596, 659
BstSCI CCNGG 1 cut(s) 543
BstSLI GKGCMC 2 cut(s) 309, 579
BstV1I GCAGC 3 cut(s) 149, 283, 700
BstX2I RGATCY 5 cut(s) 189, 338, 386, 419, 467
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 5 cut(s) 189, 338, 386, 419, 467
BsuRI GGCC 1 cut(s) 409
BtsCI GGATG 3 cut(s) 20, 515, 704
BtsIMutI CAGTG 3 cut(s) 309, 363, 673
Cac8I GCNNGC 2 cut(s) 176, 411
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 3 cut(s) 360, 407, 441
Csp6I GTAC 1 cut(s) 330
CviAII CATG 3 cut(s) 34, 157, 310
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 2 cut(s) 652, 692
DpnI GATC 8 cut(s) 191, 340, 348, 388, 421, 469, 477, 540
DpnII GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Ecl136II GAGCTC 2 cut(s) 70, 691
Eco24I GRGCYC 3 cut(s) 72, 265, 693
Eco47I GGWCC 2 cut(s) 360, 441
Eco47III AGCGCT 1 cut(s) 628
Eco53kI GAGCTC 2 cut(s) 70, 691
Eco57I CTGAAG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 264
Eco91I GGTNACC 2 cut(s) 596, 659
EcoICRI GAGCTC 2 cut(s) 70, 691
EcoO65I GGTNACC 2 cut(s) 596, 659
EcoRII CCWGG 1 cut(s) 543
EcoT38I GRGCYC 3 cut(s) 72, 265, 693
FaeI CATG 3 cut(s) 37, 160, 313
FaiI YATR 5 cut(s) 35, 158, 213, 219, 311
FatI CATG 3 cut(s) 33, 156, 309
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 138, 297, 714
FokI GGATG 3 cut(s) 7, 502, 691
FriOI GRGCYC 3 cut(s) 72, 265, 693
Fsp4HI GCNGC 3 cut(s) 138, 297, 714
FspBI CTAG 3 cut(s) 318, 447, 721
GlaI GCGC 1 cut(s) 628
GluI GCNGC 3 cut(s) 138, 297, 714
GsuI CTGGAG 3 cut(s) 182, 285, 525
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 1 cut(s) 409
HapII CCGG 1 cut(s) 708
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 3 cut(s) 37, 160, 313
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 708
HphI GGTGA 2 cut(s) 20, 533
Hpy166II GTNNAC 3 cut(s) 363, 444, 577
Hpy188I TCNGA 1 cut(s) 616
Hpy188III TCNNGA 5 cut(s) 185, 250, 266, 686, 708
Hpy8I GTNNAC 3 cut(s) 363, 444, 577
HpyAV CCTTC 2 cut(s) 598, 614
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 3 cut(s) 255, 588, 678
HpyCH4V TGCA 3 cut(s) 58, 523, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 652, 692
HpySE526I ACGT 3 cut(s) 255, 588, 678
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 3 cut(s) 37, 160, 313
HspAI GCGC 1 cut(s) 627
Kpn2I TCCGGA 1 cut(s) 707
Kzo9I GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
LmnI GCTCC 4 cut(s) 67, 75, 304, 710
Lsp1109I GCAGC 3 cut(s) 149, 283, 700
MaeI CTAG 3 cut(s) 318, 447, 721
MaeII ACGT 3 cut(s) 255, 588, 678
MaeIII GTNAC 3 cut(s) 596, 635, 659
MalI GATC 8 cut(s) 191, 340, 348, 388, 421, 469, 477, 540
MboI GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
MboII GAAGA 1 cut(s) 551
MflI RGATCY 5 cut(s) 189, 338, 386, 419, 467
MhlI GDGCHC 5 cut(s) 72, 265, 309, 579, 693
MluCI AATT 3 cut(s) 352, 400, 433
MroI TCCGGA 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 319
MspA1I CMGCKG 3 cut(s) 140, 202, 413
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
NlaIII CATG 3 cut(s) 37, 160, 313
NlaIV GGNNCC 7 cut(s) 93, 248, 361, 388, 421, 442, 490
PaeR7I CTCGAG 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 3 cut(s) 139, 298, 715
Psp124BI GAGCTC 2 cut(s) 72, 693
Psp1406I AACGTT 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 543
PspEI GGTNACC 2 cut(s) 596, 659
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 7 cut(s) 93, 248, 361, 388, 421, 442, 490
PspPI GGNCC 3 cut(s) 360, 407, 441
PsuI RGATCY 5 cut(s) 189, 338, 386, 419, 467
PvuII CAGCTG 3 cut(s) 140, 202, 413
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SacI GAGCTC 2 cut(s) 72, 693
SatI GCNGC 3 cut(s) 138, 297, 714
Sau3AI GATC 8 cut(s) 189, 338, 346, 386, 419, 467, 475, 538
Sau96I GGNCC 3 cut(s) 360, 407, 441
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 5 cut(s) 72, 265, 309, 579, 693
Sfr274I CTCGAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 360, 441
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 264, 686
SmoI CTYRAG 2 cut(s) 264, 686
SpeI ACTAGT 2 cut(s) 317, 446
Sse9I AATT 3 cut(s) 352, 400, 433
SsiI CCGC 2 cut(s) 80, 657
SspMI CTAG 3 cut(s) 318, 447, 721
SstI GAGCTC 2 cut(s) 72, 693
StyD4I CCNGG 1 cut(s) 543
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 3 cut(s) 258, 591, 681
TaqI TCGA 3 cut(s) 11, 265, 393
TasI AATT 3 cut(s) 352, 400, 433
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 3 cut(s) 309, 370, 673
TseI GCWGC 3 cut(s) 137, 296, 713
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 3 cut(s) 309, 370, 673
Van91I CCANNNNNTGG 1 cut(s) 416
VneI GTGCAC 1 cut(s) 575
VpaK11BI GGWCC 2 cut(s) 360, 441
XhoI CTCGAG 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 3 cut(s) 318, 447, 721
ZraI GACGTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.