Rh1DG242600

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000507
Physical Location & Seq
Forward (+)
45841471 .. 45843092
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG242600.1

Sequence Viewer

Length: 633 bp
ATGCTTTTAAATAGTAGCCAGCAGGCAAATGGTATCAGATACTCGGGTCATTCTTCCAAAGTCGTTCCAGCTTTGAAAACTGAAGCACTACGTGTAGACTGCTCCTCCTGTATCTTCTCCCTTCTCTGTGGATTTCATCTTTCATCCGATCCAATCATGCCTATTGGGACACTTGAAGTTCTTCTTGTTGATGCCAAAGGCCTCGACAACAATGACTTTATGGCTGACATGGACCCCTATGTCCTTTTGACTGTAAATACCCAAGAGAAGAAAAGCACTGTGGTTTCAGCTCAAGGACCTAACCCAGAATGGAATGAGACTTTTCTATTCACTATCTCGGACGATTCTGCTGACCTTCACTTGAAAATAATGGAGAAGGACAACTTCAGCGCAGATGATTATGTTGGAGAAGCAATCATTTCTCTAGAGCCAGTTTTTGAAGAAGGAAGCCTTTTGCCAACTGCATACAATGTTGTTAATCAGGAGAAGGAATATCGTGGAGGAATTAAAGTTGGACTCAAATTCACTCCTGAGGCTGAGCCTGAAGAGAGAAGTGAGTATCGTTCTGGAGAGGGCGGTGAAACAGAGGAGAGCTATGGTGGATGGAAACAATCTGCTTACGGTGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

210

Amino Acids

23.12

Weight (kDa)

4.39

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 56 - 151 1.4e-20 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 96
AciI CCGC 1 cut(s) 576
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 3 cut(s) 102, 370, 564
AdeI CACNNNGTG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 4 cut(s) 76, 176, 364, 440
AluBI AGCT 3 cut(s) 71, 290, 594
AluI AGCT 3 cut(s) 71, 290, 594
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 232, 296
AsuHPI GGTGA 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 232, 296
AxyI CCTNAGG 1 cut(s) 531
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BccI CCATC 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 425
BlpI GCTNAGC 1 cut(s) 537
Bme18I GGWCC 2 cut(s) 232, 296
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 232, 296
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse1I ACTGG 1 cut(s) 431
Bse21I CCTNAGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 143, 608
BseMII CTCAG 2 cut(s) 522, 528
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 94, 602
BshFI GGCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 1 cut(s) 576
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 523, 529
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 431
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 253, 280, 623
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 20, 24
BstDEI CTNAG 2 cut(s) 531, 537
BstF5I GGATG 2 cut(s) 143, 608
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 2 cut(s) 143, 608
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 20, 24
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 232, 296
CviAII CATG 2 cut(s) 157, 229
DdeI CTNAG 2 cut(s) 531, 537
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 92
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 232, 296
Eco57I CTGAAG 3 cut(s) 102, 370, 564
Eco81I CCTNAGG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 296
FaeI CATG 2 cut(s) 160, 232
FaiI YATR 7 cut(s) 158, 221, 230, 240, 402, 466, 597
FalI AAGNNNNNCTT 6 cut(s) 168, 200, 368, 400, 435, 467
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 156, 228
FblI GTMKAC 1 cut(s) 96
FokI GGATG 2 cut(s) 130, 615
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 201
HhaI GCGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 160, 232
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 2 cut(s) 344, 516
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 38, 148, 340
Hpy188III TCNNGA 4 cut(s) 425, 482, 530, 567
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 5 cut(s) 131, 365, 370, 437, 481
HpyCH4III ACNGT 3 cut(s) 253, 280, 623
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 531, 537
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 160, 232
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 107
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 6 cut(s) 45, 106, 173, 280, 452, 557
MluCI AATT 2 cut(s) 504, 521
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 2 cut(s) 385, 493
MnlI CCTC 7 cut(s) 115, 212, 494, 526, 565, 580, 619
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 3 cut(s) 8, 477, 507
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 160, 232
NlaIV GGNNCC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 344
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Ppu21I YACGTR 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 232, 296
PspPPI RGGWCCY 1 cut(s) 296
SaqAI TTAA 3 cut(s) 8, 477, 507
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 232, 296
SchI GAGTC 1 cut(s) 510
SetI ASST 6 cut(s) 73, 94, 292, 301, 357, 596
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 2 cut(s) 232, 296
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 504, 521
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 1 cut(s) 576
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 1 cut(s) 201
TaaI ACNGT 3 cut(s) 253, 280, 623
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 504, 521
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 3 cut(s) 8, 477, 507
Tru9I TTAA 3 cut(s) 8, 477, 507
TscAI CASTG 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 125, 132
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 232, 296
XapI RAATTY 1 cut(s) 521
XbaI TCTAGA 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.