FvH4_7g13490

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000507
Physical Location & Seq
Forward (+)
12098478 .. 12101989
3512 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13490.t2

Sequence Viewer

Length: 765 bp
ATGCCTCATGGAACGCTTGAAGTCCTTCTGGTTGGGGCCAAAGACCTTGCAGACCATGATTTTTTCGGTAAAATGGATCCCTATGTCCTTTTATCTTTAAGGACCCAAGAGAAGAAGAGCACTGTGGCATCAGGACAAGGATCTACACCAGAATGGAATGAAACTTTTCAATTCACAGTCTCATCGGATGATGTTACCGAACTCAGCTTAAAAATCTATGACAAAGATACCTTCACCCCAGATGATTTTCTTGGAGAAGCAACCATTCCTTTAGAAACAGTGTTCATGGAAGGAAGCACTGAACCGACTAAATACAATGTCGTCAATGAGAATAATGAATATCATGGAGATATTACAGTTGGACTCACTTTCACCCGTGAGCGAATCGGCTCTCGTGCGGGCGGCTATGATGAAGAAGAACATGGGGGGAAACATGGTGGCTCAAGGAGGAGACATGGCGACTCTAGGGGGGAGAGCTCTGATGATGAAGACTCTAGGAGGGGTGGCTATGGAAACTCTACGGAGAGGTACGGTGTAGGTGATACTGATTCTAGGAGGGGCGGAGGCTATGGCAACTCTAGGGAGAGGCATGGTGGTGATGATCACTCTAGGACAGGTGGCTATGACAACTCTAGGGAGAGGTGTAGTGATGATGACGAGAGTGGCGGAGGCTATGGTGAGTCCAGAGGACGCCGTGGTGGACGGAGAGAGTCAAATGAGGAGGAGAGCTATGGTGGATACAAAGAATCATCGTACCGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

255

Amino Acids

28.13

Weight (kDa)

4.87

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 103 1.3e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 398, 402, 561, 666
AclWI GGATC 3 cut(s) 71, 84, 148
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 2 cut(s) 530, 755
AgsI TTSAA 2 cut(s) 20, 170
AluBI AGCT 3 cut(s) 207, 477, 729
AluI AGCT 3 cut(s) 207, 477, 729
Alw21I GWGCWC 2 cut(s) 122, 479
Alw26I GTCTC 2 cut(s) 184, 445
AlwI GGATC 3 cut(s) 71, 84, 148
AoxI GGCC 1 cut(s) 36
Asp700I GAANNNNTTC 2 cut(s) 24, 165
AspS9I GGNCC 2 cut(s) 36, 102
AsuHPI GGTGA 5 cut(s) 226, 364, 551, 608, 689
AvaII GGWCC 1 cut(s) 102
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 122, 479
BceAI ACGGC 1 cut(s) 678
BciVI GTATCC 1 cut(s) 731
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 184, 445
BfaI CTAG 6 cut(s) 465, 495, 552, 579, 609, 633
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 36, 102
BmiI GGNNCC 3 cut(s) 37, 78, 104
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 694
BseDI CCNNGG 1 cut(s) 694
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 217
BseRI GAGGAG 3 cut(s) 463, 734, 737
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 122, 479
BsmAI GTCTC 2 cut(s) 184, 445
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 122, 479
Bsp143I GATC 3 cut(s) 76, 140, 601
BspACI CCGC 4 cut(s) 398, 402, 561, 666
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 37, 78, 104
BspPI GGATC 3 cut(s) 71, 84, 148
BspQI GCTCTTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 694
BssMI GATC 3 cut(s) 76, 140, 601
BssNI GRCGYC 1 cut(s) 691
BssSI CACGAG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 393
Bst4CI ACNGT 5 cut(s) 124, 178, 280, 358, 533
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 3 cut(s) 79, 143, 604
BstMAI GTCTC 2 cut(s) 184, 445
BstMBI GATC 3 cut(s) 76, 140, 601
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 120, 285, 297
Cac8I GCNNGC 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 36, 102
CseI GACGC 1 cut(s) 699
Csp6I GTAC 2 cut(s) 529, 754
CviAII CATG 8 cut(s) 8, 56, 286, 344, 422, 434, 455, 590
CviQI GTAC 2 cut(s) 529, 754
DdeI CTNAG 1 cut(s) 203
DpnI GATC 3 cut(s) 78, 142, 603
DpnII GATC 3 cut(s) 76, 140, 601
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 2 cut(s) 576, 681
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 8 cut(s) 11, 59, 289, 347, 425, 437, 458, 593
FatI CATG 8 cut(s) 7, 55, 285, 343, 421, 433, 454, 589
FauI CCCGC 1 cut(s) 391
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 1 cut(s) 403
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 403
FspBI CTAG 6 cut(s) 465, 495, 552, 579, 609, 633
GluI GCNGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 699
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 8 cut(s) 11, 59, 289, 347, 425, 437, 458, 593
HinfI GANTC 8 cut(s) 363, 384, 461, 491, 548, 680, 710, 746
HphI GGTGA 5 cut(s) 226, 364, 551, 608, 689
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 2 cut(s) 187, 481
Hpy188III TCNNGA 2 cut(s) 132, 684
Hpy8I GTNNAC 1 cut(s) 701
HpyAV CCTTC 3 cut(s) 35, 241, 284
HpyCH4III ACNGT 5 cut(s) 124, 178, 280, 358, 533
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 8 cut(s) 11, 59, 289, 347, 425, 437, 458, 593
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 76, 140, 601
LguI GCTCTTC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 14, 117, 162, 252, 600, 697
LweI GCATC 1 cut(s) 137
MaeI CTAG 6 cut(s) 465, 495, 552, 579, 609, 633
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 78, 142, 603
MboI GATC 3 cut(s) 76, 140, 601
MboII GAAGA 5 cut(s) 124, 127, 425, 428, 500
MflI RGATCY 2 cut(s) 76, 140
MhlI GDGCHC 2 cut(s) 122, 479
MluCI AATT 1 cut(s) 170
MlyI GAGTC 5 cut(s) 357, 455, 485, 689, 719
MmeI TCCRAC 1 cut(s) 340
MroXI GAANNNNTTC 2 cut(s) 24, 165
MseI TTAA 2 cut(s) 98, 209
MslI CAYNNNNRTG 2 cut(s) 151, 594
NdeII GATC 3 cut(s) 76, 140, 601
NlaIII CATG 8 cut(s) 11, 59, 289, 347, 425, 437, 458, 593
NlaIV GGNNCC 3 cut(s) 37, 78, 104
PciSI GCTCTTC 1 cut(s) 110
PdmI GAANNNNTTC 2 cut(s) 24, 165
PfeI GAWTC 3 cut(s) 384, 548, 746
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 5 cut(s) 357, 455, 485, 688, 718
PpsI GAGTC 5 cut(s) 357, 455, 485, 688, 718
PpuMI RGGWCCY 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 37, 78, 104
PspPI GGNCC 2 cut(s) 36, 102
PspPPI RGGWCCY 1 cut(s) 102
PsuI RGATCY 2 cut(s) 76, 140
RsaI GTAC 2 cut(s) 530, 755
RsaNI GTAC 2 cut(s) 529, 754
RseI CAYNNNNRTG 2 cut(s) 151, 594
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 98, 209
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 76, 140, 601
Sau96I GGNCC 2 cut(s) 36, 102
SchI GAGTC 5 cut(s) 357, 455, 485, 689, 719
SduI GDGCHC 2 cut(s) 122, 479
SetI ASST 9 cut(s) 48, 209, 233, 479, 530, 541, 619, 644, 731
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 151, 594
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 1 cut(s) 170
SsiI CCGC 4 cut(s) 398, 402, 561, 666
SspMI CTAG 6 cut(s) 465, 495, 552, 579, 609, 633
SstI GAGCTC 1 cut(s) 479
TaaI ACNGT 5 cut(s) 124, 178, 280, 358, 533
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 3 cut(s) 384, 548, 746
Tru1I TTAA 2 cut(s) 98, 209
Tru9I TTAA 2 cut(s) 98, 209
TscAI CASTG 3 cut(s) 127, 285, 304
TspDTI ATGAA 5 cut(s) 174, 274, 351, 426, 501
TspGWI ACGGA 2 cut(s) 536, 718
TspRI CASTG 3 cut(s) 127, 285, 304
VpaK11BI GGWCC 1 cut(s) 102
XmnI GAANNNNTTC 2 cut(s) 24, 165
XspI CTAG 6 cut(s) 465, 495, 552, 579, 609, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.