MD01G1049000.v1.1

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000507
Physical Location & Seq
Reverse (-)
15186701 .. 15188266
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1049000.v1.1.491

Sequence Viewer

Length: 426 bp
ATGCCTCTCGGAACCCTTGAAGTCCTTCTTGTTGAAGCTAAAGGCCTCAAGAACAAAGATTTTCTCTATCTGAATTGTTTGGTTCTTCTATCAGCTGGATGCTGGAAAGGATGTGACCCCGAATGGAATGAAAGTTTTTTGTTCACAGTTACGGATGATGTTTCTGAGCTTCGTTTGAAAATAATGGACAAAGATACCTTTACCAAGGATGACTTTGTTGGCGAAGCAATCGTTCCTTTGGAGCCATTGTTCGCTGATGGAAGGCTTCCTCCGACTGCCTACAATGTTGTCAACAAGGACCAGGAATATCGCGGGGAGATCATAATTGGAATTACTTTCACTCCTGAGCCTCAGGTATCAATAGAAGCAGCTTCTAGAAGATATGATGAGGAGAACTATGGTGGATGGAAAGAATTATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

142

Amino Acids

15.97

Weight (kDa)

4.39

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 88 7.1e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 312
AgsI TTSAA 3 cut(s) 20, 35, 178
AjnI CCWGG 1 cut(s) 300
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 38, 95, 169, 371
AluI AGCT 4 cut(s) 38, 95, 169, 371
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 351
BbvI GCAGC 1 cut(s) 380
BccI CCATC 2 cut(s) 251, 399
BciT130I CCWGG 1 cut(s) 302
BfaI CTAG 2 cut(s) 375, 424
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 13, 243
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 325, 355
Bse21I CCTNAGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 5 cut(s) 104, 116, 160, 214, 410
BseMII CTCAG 3 cut(s) 156, 336, 365
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 45
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 3 cut(s) 157, 337, 364
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 13, 243
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 165, 345, 351
BstF5I GGATG 5 cut(s) 104, 116, 160, 214, 410
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 5 cut(s) 104, 116, 160, 214, 410
Cfr13I GGNCC 1 cut(s) 298
CviJI RGCY 8 cut(s) 38, 45, 95, 169, 244, 265, 349, 371
CviKI_1 RGCY 8 cut(s) 38, 45, 95, 169, 244, 265, 349, 371
DdeI CTNAG 3 cut(s) 165, 345, 351
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 298
Eco81I CCTNAGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaiI YATR 3 cut(s) 323, 384, 399
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 197, 229
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 5 cut(s) 111, 123, 167, 221, 417
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 375, 424
GluI GCNGC 1 cut(s) 369
HaeIII GGCC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 144, 292
Hpy188I TCNGA 4 cut(s) 11, 72, 166, 273
Hpy188III TCNNGA 3 cut(s) 49, 344, 375
Hpy8I GTNNAC 2 cut(s) 144, 292
HpyAV CCTTC 2 cut(s) 35, 255
HpyCH4III ACNGT 1 cut(s) 148
HpyF3I CTNAG 3 cut(s) 165, 345, 351
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 81, 88, 287, 314, 338, 357
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 1 cut(s) 89
MaeI CTAG 2 cut(s) 375, 424
MaeIII GTNAC 2 cut(s) 113, 148
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 2 cut(s) 77, 390
MluCI AATT 4 cut(s) 73, 324, 330, 413
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 5 cut(s) 15, 56, 279, 360, 382
MroXI GAANNNNTTC 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 312
NdeII GATC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 13, 243
NmuCI GTSAC 1 cut(s) 113
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 13, 243
PspPI GGNCC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 95
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 40, 97, 171, 200, 357, 373
SfaNI GCATC 1 cut(s) 89
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 4 cut(s) 73, 324, 330, 413
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 1 cut(s) 312
SspMI CTAG 2 cut(s) 375, 424
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 148
TasI AATT 4 cut(s) 73, 324, 330, 413
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 298
XbaI TCTAGA 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 375, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.