Rmu_sc0003313.1_g000001

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003313.1
OG0000507
Physical Location & Seq
Forward (+)
235 .. 932
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003313.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atggatccctatgtcattttcactttgaagacccaagagaagaaaagcactgttgccaaagggcaaggatctgaaccagcatggaatgaaagcttcttgttcaccgtcaccaatgatgtttcggaacttcatttgaaaataatggatgaagacgcctttaccgctgatgattatgttggagaagcaaccatttctttagagccagtgttcaatgtaggaattgttccaccaactgcgtacaacgttgtcaacaaggaccaggaatatcatggggagatcaaaattggactcaatttctctcctgagccggaggacactatgggggtgttgaggattatggtggatggaaagaatcaactttctaagaatgaccttatgaccttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

4.4

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 243
AclWI GGATC 2 cut(s) 12, 76
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 3 cut(s) 28, 136, 211
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
AlwI GGATC 2 cut(s) 12, 76
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 94, 100
AvaII GGWCC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 35, 156
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 260
BpiI GAAGAC 2 cut(s) 35, 156
Bpu10I CCTNAGC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 151, 349
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 308
Bsp143I GATC 3 cut(s) 4, 68, 276
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 76
BsrI ACTGG 1 cut(s) 203
BssMI GATC 3 cut(s) 4, 68, 276
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 52, 106
BstACI GRCGYC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 303, 363
BstF5I GGATG 2 cut(s) 151, 349
BstKTI GATC 3 cut(s) 7, 71, 279
BstMBI GATC 3 cut(s) 4, 68, 276
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstV2I GAAGAC 2 cut(s) 35, 156
BstX2I RGATCY 2 cut(s) 4, 68
BstYI RGATCY 2 cut(s) 4, 68
BtsCI GGATG 2 cut(s) 151, 349
BtsIMutI CAGTG 2 cut(s) 48, 210
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 81, 269
CviJI RGCY 3 cut(s) 93, 202, 307
CviKI_1 RGCY 3 cut(s) 93, 202, 307
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 303, 363
DpnI GATC 3 cut(s) 6, 70, 278
DpnII GATC 3 cut(s) 4, 68, 276
Eco47I GGWCC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 84, 272
FaiI YATR 7 cut(s) 12, 82, 174, 270, 320, 338, 377
FatI CATG 2 cut(s) 80, 268
FokI GGATG 2 cut(s) 158, 356
HapII CCGG 1 cut(s) 308
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 84, 272
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 2 cut(s) 288, 352
HpaII CCGG 1 cut(s) 308
HphI GGTGA 2 cut(s) 94, 100
Hpy166II GTNNAC 2 cut(s) 102, 250
Hpy188I TCNGA 2 cut(s) 73, 124
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 102, 250
HpyCH4III ACNGT 2 cut(s) 52, 106
HpyCH4IV ACGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 303, 363
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 84, 272
Kzo9I GATC 3 cut(s) 4, 68, 276
LpnPI CCDG 6 cut(s) 90, 216, 245, 272, 315, 321
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 6, 70, 278
MboI GATC 3 cut(s) 4, 68, 276
MboII GAAGA 3 cut(s) 40, 52, 161
MflI RGATCY 2 cut(s) 4, 68
MluCI AATT 3 cut(s) 219, 282, 292
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 304, 324
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 4, 68, 276
NlaIII CATG 2 cut(s) 84, 272
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 352
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 207, 239
PsuI RGATCY 2 cut(s) 4, 68
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
Sau3AI GATC 3 cut(s) 4, 68, 276
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 260
SetI ASST 4 cut(s) 95, 246, 375, 383
SinI GGWCC 1 cut(s) 256
Sse9I AATT 3 cut(s) 219, 282, 292
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 52, 106
TaiI ACGT 1 cut(s) 246
TasI AATT 3 cut(s) 219, 282, 292
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 2 cut(s) 55, 210
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 102, 119, 162
TspRI CASTG 2 cut(s) 55, 210
VpaK11BI GGWCC 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.