Rroxscaffold_4G00302190

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000507
Physical Location & Seq
Reverse (-)
22577309 .. 22578982
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302190.1

Sequence Viewer

Length: 627 bp
ATGGATCCCTATGTCATTTTAACCTTACGGACTCAGGAGAAGAAAAGCACTGTGGTAGAAGGGCAAGGATCTGAACCAGAATGGAATGAAACTTTTCAATTCACGGTCACATCGGATGATGTTACCGAACTCCACTTAAAAATAATGGACAAAGATACCTTCAGCGCGGATGATTTTGTTGGAGAAGCAACCATTCCTTTAGAATCAGTGTTCGTGAAGGGAAACATAGCACCATCTAAATACAATGTTGTCAATGCGGAAAAGGAATATCATGGAGAGATTACAGTTGGACTCATTTTCACCCCTGAGGAGGAGACATGGCGATTCCAGGGGGAGAGCTATGGTGATGACTATCAGGGGAGCTACGGTGATGACTCAAGGAGGAACCATGGTGACTCTAGGGAGAGGCATGGTCATGATGACTCTAGGAGGGGCGGCCATGGTGACTCTAGGGAGAGGTATGATGATGATGACTGCGGGGAGGCTATGGTGATTCCAGGGGAAGGAGTGGTGGACGGAGAGAGTCATCTAGGTATGAGAAGGAGGAGGAAAGCTATGGTGGATACAAAGAATCATCGTACCGAGATTGAGGATCATGACCTTGGTTCTTTACAGGGTGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

208

Amino Acids

23.52

Weight (kDa)

4.65

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 1 - 76 9.2e-19 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 4 cut(s) 167, 257, 435, 477
AclWI GGATC 3 cut(s) 12, 76, 600
AcoI YGGCCR 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 310, 503
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 2 cut(s) 327, 496
AluBI AGCT 3 cut(s) 339, 363, 554
AluI AGCT 3 cut(s) 339, 363, 554
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 3 cut(s) 12, 76, 600
AoxI GGCC 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 6 cut(s) 292, 356, 380, 404, 455, 502
AxyI CCTNAGG 1 cut(s) 306
BamHI GGATCC 1 cut(s) 4
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 329, 498
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 4 cut(s) 399, 426, 450, 530
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
Bme1390I CCNGG 2 cut(s) 329, 498
BmiI GGNNCC 2 cut(s) 6, 386
BmrFI CCNGG 2 cut(s) 329, 498
BpuEI CTTGAG 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 5 cut(s) 328, 388, 439, 497, 601
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 503
Bse21I CCTNAGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 2 cut(s) 329, 498
BseDI CCNNGG 5 cut(s) 328, 388, 439, 497, 601
BseGI GGATG 2 cut(s) 121, 175
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 310, 503
BseMII CTCAG 2 cut(s) 47, 297
BseRI GAGGAG 3 cut(s) 323, 326, 559
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 310, 503
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 438
Bsp143I GATC 3 cut(s) 4, 68, 592
Bsp19I CCATGG 2 cut(s) 388, 439
BspACI CCGC 4 cut(s) 167, 257, 435, 477
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 46, 298
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 2 cut(s) 415, 595
BspLI GGNNCC 2 cut(s) 6, 386
BspPI GGATC 3 cut(s) 12, 76, 600
BssECI CCNNGG 5 cut(s) 328, 388, 439, 497, 601
BssMI GATC 3 cut(s) 4, 68, 592
BssT1I CCWWGG 3 cut(s) 388, 439, 601
Bst2UI CCWGG 2 cut(s) 329, 498
Bst4CI ACNGT 4 cut(s) 52, 106, 286, 368
BstDEI CTNAG 2 cut(s) 33, 306
BstDSI CCRYGG 2 cut(s) 388, 439
BstF5I GGATG 2 cut(s) 121, 175
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 3 cut(s) 7, 71, 595
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 3 cut(s) 4, 68, 592
BstNI CCWGG 2 cut(s) 329, 498
BstSCI CCNGG 2 cut(s) 327, 496
BstUI CGCG 1 cut(s) 167
BstX2I RGATCY 2 cut(s) 4, 68
BstYI RGATCY 2 cut(s) 4, 68
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 2 cut(s) 388, 439
BtsCI GGATG 2 cut(s) 121, 175
BtsIMutI CAGTG 2 cut(s) 48, 213
CciI TCATGA 2 cut(s) 415, 595
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 579
CviAII CATG 7 cut(s) 272, 318, 389, 410, 416, 440, 596
CviJI RGCY 5 cut(s) 339, 363, 438, 485, 554
CviKI_1 RGCY 5 cut(s) 339, 363, 438, 485, 554
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 33, 306
DpnI GATC 3 cut(s) 6, 70, 594
DpnII GATC 3 cut(s) 4, 68, 592
EaeI YGGCCR 1 cut(s) 436
Eco130I CCWWGG 3 cut(s) 388, 439, 601
Eco57I CTGAAG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 327, 496
EcoT14I CCWWGG 3 cut(s) 388, 439, 601
ErhI CCWWGG 3 cut(s) 388, 439, 601
FaeI CATG 7 cut(s) 275, 321, 392, 413, 419, 443, 599
FatI CATG 7 cut(s) 271, 317, 388, 409, 415, 439, 595
FauI CCCGC 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 2 cut(s) 128, 182
Fsp4HI GCNGC 1 cut(s) 436
FspBI CTAG 4 cut(s) 399, 426, 450, 530
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 438
HhaI GCGC 1 cut(s) 167
Hin1II CATG 7 cut(s) 275, 321, 392, 413, 419, 443, 599
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HphI GGTGA 6 cut(s) 292, 356, 380, 404, 455, 502
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 73, 115
Hpy188III TCNNGA 4 cut(s) 35, 214, 416, 596
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 5 cut(s) 53, 169, 211, 497, 534
HpyCH4III ACNGT 4 cut(s) 52, 106, 286, 368
HpyF3I CTNAG 2 cut(s) 33, 306
Hsp92II CATG 7 cut(s) 275, 321, 392, 413, 419, 443, 599
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 4, 68, 592
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 9 cut(s) 20, 90, 314, 318, 341, 341, 483, 510, 599
MaeI CTAG 4 cut(s) 399, 426, 450, 530
MaeIII GTNAC 4 cut(s) 106, 121, 392, 443
MalI GATC 3 cut(s) 6, 70, 594
MboI GATC 3 cut(s) 4, 68, 592
MboII GAAGA 1 cut(s) 52
MflI RGATCY 2 cut(s) 4, 68
MluCI AATT 1 cut(s) 98
MlyI GAGTC 7 cut(s) 25, 285, 368, 389, 416, 440, 532
MmeI TCCRAC 2 cut(s) 160, 268
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 20, 137
MslI CAYNNNNRTG 1 cut(s) 414
MspR9I CCNGG 2 cut(s) 329, 498
MvaI CCWGG 2 cut(s) 329, 498
MvnI CGCG 1 cut(s) 167
NcoI CCATGG 2 cut(s) 388, 439
NdeII GATC 3 cut(s) 4, 68, 592
NlaIII CATG 7 cut(s) 275, 321, 392, 413, 419, 443, 599
NlaIV GGNNCC 2 cut(s) 6, 386
NmuCI GTSAC 3 cut(s) 106, 392, 443
PagI TCATGA 2 cut(s) 415, 595
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 4 cut(s) 203, 324, 493, 571
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 7 cut(s) 25, 285, 368, 389, 416, 440, 531
PpsI GAGTC 7 cut(s) 25, 285, 368, 389, 416, 440, 531
Psp6I CCWGG 2 cut(s) 327, 496
PspGI CCWGG 2 cut(s) 327, 496
PspN4I GGNNCC 2 cut(s) 6, 386
PsuI RGATCY 2 cut(s) 4, 68
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 2 cut(s) 20, 137
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 3 cut(s) 4, 68, 592
SchI GAGTC 7 cut(s) 25, 285, 368, 389, 416, 440, 532
ScrFI CCNGG 2 cut(s) 329, 498
SetI ASST 8 cut(s) 26, 161, 341, 365, 461, 535, 556, 603
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 1 cut(s) 98
SsiI CCGC 4 cut(s) 167, 257, 435, 477
SspMI CTAG 4 cut(s) 399, 426, 450, 530
StyD4I CCNGG 2 cut(s) 327, 496
StyI CCWWGG 3 cut(s) 388, 439, 601
TaaI ACNGT 4 cut(s) 52, 106, 286, 368
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 4 cut(s) 203, 324, 493, 571
Tru1I TTAA 2 cut(s) 20, 137
Tru9I TTAA 2 cut(s) 20, 137
TscAI CASTG 2 cut(s) 55, 213
TseFI GTSAC 3 cut(s) 106, 392, 443
Tsp45I GTSAC 3 cut(s) 106, 392, 443
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 2 cut(s) 43, 531
TspRI CASTG 2 cut(s) 55, 213
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 4 cut(s) 399, 426, 450, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.