Rh1DG242200

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000507
Physical Location & Seq
Forward (+)
45824554 .. 45825947
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG242200.1

Sequence Viewer

Length: 396 bp
ATGGCTTACGGGACTCTTGAAGTTGTTCTTGTTAATGCCAAACACCTCCACAACACTGGTTTTCTCACTAAAATGGATCCCTATGTCATTTTCTCTGTGAAGACCCAAGAGAAAATAAGCACTGTGGCCAAAGGCCAAGGATCTAACCCAGAATGGAATGAAAGCTTCTTATTCACAGTGACCGATGATGTGTCCGAGCTTCGTTTGAAAATAATGGACAAAGATACCTTTACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGACCCAGCATTGTTCATTCATGGAAGCCTTCCACCAACTTCATACAATGTTGTCAACAAGCACCAGAAATATCGCGGAGAAATCAAAATAGGACTCAATTTCACTCCTGATCCTCAGAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

5.46

Isoelectric Point (pI)

15.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 99 1.9e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 345
AciI CCGC 2 cut(s) 234, 345
AclWI GGATC 4 cut(s) 71, 84, 148, 374
AcoI YGGCCR 1 cut(s) 126
AgsI TTSAA 2 cut(s) 20, 208
AluBI AGCT 2 cut(s) 165, 199
AluI AGCT 2 cut(s) 165, 199
AlwI GGATC 4 cut(s) 71, 84, 148, 374
AoxI GGCC 2 cut(s) 126, 133
Asp700I GAANNNNTTC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 107
BfaI CTAG 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 128, 135
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 2 cut(s) 128, 135
Bsp143I GATC 3 cut(s) 76, 140, 379
BspACI CCGC 2 cut(s) 234, 345
BspANI GGCC 2 cut(s) 128, 135
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 4 cut(s) 71, 84, 148, 374
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 76, 140, 379
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 124, 178
BstDEI CTNAG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 3 cut(s) 79, 143, 382
BstMBI GATC 3 cut(s) 76, 140, 379
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 76, 140
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 2 cut(s) 128, 135
BtsIMutI CAGTG 3 cut(s) 54, 120, 183
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 5, 128, 135, 165, 199, 297
CviKI_1 RGCY 6 cut(s) 5, 128, 135, 165, 199, 297
DdeI CTNAG 1 cut(s) 384
DpnI GATC 3 cut(s) 78, 142, 381
DpnII GATC 3 cut(s) 76, 140, 379
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 293
FaiI YATR 3 cut(s) 84, 291, 313
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 289
FspBI CTAG 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 278
HaeIII GGCC 2 cut(s) 128, 135
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 13, 363
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 196, 387
Hpy188III TCNNGA 3 cut(s) 17, 269, 377
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 124, 178
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 3 cut(s) 76, 140, 379
LpnPI CCDG 5 cut(s) 42, 162, 288, 347, 390
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 78, 142, 381
MboI GATC 3 cut(s) 76, 140, 379
MboII GAAGA 1 cut(s) 112
MflI RGATCY 2 cut(s) 76, 140
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 367
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 7, 357
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 56, 276, 393
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 128
MvnI CGCG 1 cut(s) 345
NdeII GATC 3 cut(s) 76, 140, 379
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 24
PleI GAGTC 2 cut(s) 7, 357
PpsI GAGTC 2 cut(s) 7, 357
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 2 cut(s) 76, 140
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 3 cut(s) 76, 140, 379
SchI GAGTC 2 cut(s) 7, 357
SetI ASST 4 cut(s) 48, 167, 201, 230
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 1 cut(s) 367
SsiI CCGC 2 cut(s) 234, 345
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 124, 178
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 367
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 61, 127, 183
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 174, 274, 278, 300
TspRI CASTG 3 cut(s) 61, 127, 183
XbaI TCTAGA 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.