pycom01g07400

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000507
Physical Location & Seq
Reverse (-)
8314289 .. 8315790
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07400.1

Sequence Viewer

Length: 471 bp
ATGCCTATCGGAACGCTTGAAGTTCTTCTTGTCGAAGCCAAGGGTCTCGACAACAATGATTTTATGGCTGACATGGATCCTTATGTCATCTTAACTGTAAAAACCCAAGAGAAGAATAGCAATGTGGTCTCAGGGCAAGGATCTACACCAGAATGGAATGAAACCTTTCTATTCACCGTCTCAGATGATGTTTCCGAACTCAATTTGAAAATCATGGAGAAAGATAACTTCAGTGCGGATGATTTTGTCGGAGAAGCAACCATTTGTTTAGAGCCAGTGTTCACTGAAGGAAGCCTTCCTCCAGCTGCATACAATGTTGTCAACAAGGACAAAGAATTTTGCGGAGAGATCAAAATCGGACTCACATTCACTCCCGAGCCTGAGAGAAGCGACAACGTTCCTTCTGGAGGATACGGTGAGTCCGAGGAGAGCTATGGCGGATGGAAACAATCGTCTTACGGGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

157

Amino Acids

17.12

Weight (kDa)

4.05

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 96 2.1e-20 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 236, 342, 438
AclI AACGTT 1 cut(s) 396
AclWI GGATC 3 cut(s) 71, 84, 148
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 2 cut(s) 214, 306
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 20, 208
AluBI AGCT 2 cut(s) 305, 432
AluI AGCT 2 cut(s) 305, 432
Alw26I GTCTC 3 cut(s) 50, 133, 184
AlwI GGATC 3 cut(s) 71, 84, 148
Ama87I CYCGRG 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 2 cut(s) 24, 165
AsuHPI GGTGA 2 cut(s) 166, 428
AvaI CYCGRG 1 cut(s) 374
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 435
BciVI GTATCC 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 50, 133, 184
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 285, 426
BsaBI GATNNNNATC 1 cut(s) 353
BsaI GGTCTC 2 cut(s) 50, 133
BsaJI CCNNGG 2 cut(s) 39, 423
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 39, 423
BseGI GGATG 2 cut(s) 244, 446
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 144, 195, 372
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 3 cut(s) 50, 133, 184
BsmBI CGTCTC 1 cut(s) 184
Bso31I GGTCTC 2 cut(s) 50, 133
BsoBI CYCGRG 1 cut(s) 374
Bsp143I GATC 3 cut(s) 76, 140, 348
BspACI CCGC 3 cut(s) 236, 342, 438
BspCNI CTCAG 3 cut(s) 143, 194, 373
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 3 cut(s) 71, 84, 148
BspTNI GGTCTC 2 cut(s) 50, 133
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 39, 423
BssMI GATC 3 cut(s) 76, 140, 348
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 97, 178, 416
BstDEI CTNAG 3 cut(s) 130, 181, 381
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 244, 446
BstKTI GATC 3 cut(s) 79, 143, 351
BstMAI GTCTC 3 cut(s) 50, 133, 184
BstMBI GATC 3 cut(s) 76, 140, 348
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuI GTATCC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 244, 446
BtsIMutI CAGTG 3 cut(s) 238, 282, 282
CviAII CATG 2 cut(s) 73, 214
CviJI RGCY 7 cut(s) 38, 68, 274, 294, 305, 379, 432
CviKI_1 RGCY 7 cut(s) 38, 68, 274, 294, 305, 379, 432
DdeI CTNAG 3 cut(s) 130, 181, 381
DpnI GATC 3 cut(s) 78, 142, 350
DpnII GATC 3 cut(s) 76, 140, 348
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 50, 133
Eco57I CTGAAG 2 cut(s) 214, 306
Eco88I CYCGRG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 76, 217
FaiI YATR 6 cut(s) 65, 74, 84, 215, 310, 435
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 279, 311
FatI CATG 2 cut(s) 72, 213
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 251, 453
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 285, 426
Hin1II CATG 2 cut(s) 76, 217
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 360, 419
HphI GGTGA 2 cut(s) 166, 428
Hpy166II GTNNAC 2 cut(s) 282, 322
Hpy188I TCNGA 6 cut(s) 11, 184, 196, 251, 359, 424
Hpy188III TCNNGA 3 cut(s) 47, 374, 405
Hpy8I GTNNAC 2 cut(s) 282, 322
HpyAV CCTTC 3 cut(s) 281, 305, 411
HpyCH4III ACNGT 3 cut(s) 97, 178, 416
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 130, 181, 381
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 76, 217
Kzo9I GATC 3 cut(s) 76, 140, 348
LpnPI CCDG 6 cut(s) 117, 162, 288, 315, 390, 393
Lsp1109I GCAGC 1 cut(s) 292
MaeII ACGT 1 cut(s) 396
MalI GATC 3 cut(s) 78, 142, 350
MboI GATC 3 cut(s) 76, 140, 348
MboII GAAGA 2 cut(s) 17, 124
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 2 cut(s) 202, 335
MlyI GAGTC 2 cut(s) 354, 428
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 4 cut(s) 309, 401, 418, 457
MroXI GAANNNNTTC 2 cut(s) 24, 165
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 305
NdeII GATC 3 cut(s) 76, 140, 348
NlaIII CATG 2 cut(s) 76, 217
NlaIV GGNNCC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PdmI GAANNNNTTC 2 cut(s) 24, 165
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 2 cut(s) 354, 427
PpsI GAGTC 2 cut(s) 354, 427
Psp1406I AACGTT 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 2 cut(s) 76, 140
PvuII CAGCTG 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 76, 140, 348
SchI GAGTC 2 cut(s) 354, 428
SetI ASST 4 cut(s) 167, 307, 399, 434
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 2 cut(s) 202, 335
SsiI CCGC 3 cut(s) 236, 342, 438
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 97, 178, 416
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 33, 48
TasI AATT 2 cut(s) 202, 335
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 3 cut(s) 238, 282, 289
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 3 cut(s) 238, 282, 289
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 2 cut(s) 24, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.