Rh1DG242100

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000507
Physical Location & Seq
Forward (+)
45807852 .. 45820581
12730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG242100.1

Sequence Viewer

Length: 372 bp
ATGCTAAACTGGATCCCTAGCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGCACTGTTGCCAAAGGGCAAGGATCTAAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACACCTTTACCGCTGATGATTTGTTGGAGAAGCAACGTCATATTTCTTTAGAGCCAGTGTTCAATGTAGGAATTGTTCCACCAACTGCGTACAACGTTGTCAACAAGGACCAGGAATATCATGGGGAGATCAAAATTGGACTCAATTTCACTCCTGAGCCAGAGGAGGGAACCAAAAAGATTGGCGACCACTCTAGGATCAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

5.53

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 7 - 64 5.7e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclI AACGTT 1 cut(s) 258
AclWI GGATC 4 cut(s) 7, 20, 88, 368
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 40, 148, 226
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 2 cut(s) 21, 105
AluI AGCT 2 cut(s) 21, 105
AlwI GGATC 4 cut(s) 7, 20, 88, 368
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 106, 112
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 47, 168
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 2 cut(s) 18, 357
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 14, 334
BmrFI CCNGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 47, 168
Bpu10I CCTNAGC 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 14, 218
BseBI CCWGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 14, 218
BseRI GAGGAG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 329
Bsp143I GATC 4 cut(s) 12, 80, 291, 360
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 14, 334
BspPI GGATC 4 cut(s) 7, 20, 88, 368
BsrI ACTGG 2 cut(s) 14, 218
BssMI GATC 4 cut(s) 12, 80, 291, 360
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 64, 118
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 4 cut(s) 15, 83, 294, 363
BstMBI GATC 4 cut(s) 12, 80, 291, 360
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstV2I GAAGAC 2 cut(s) 47, 168
BstX2I RGATCY 2 cut(s) 12, 80
BstYI RGATCY 2 cut(s) 12, 80
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 60, 225
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 93, 284
CviJI RGCY 4 cut(s) 21, 105, 217, 322
CviKI_1 RGCY 4 cut(s) 21, 105, 217, 322
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 318
DpnI GATC 4 cut(s) 14, 82, 293, 362
DpnII GATC 4 cut(s) 12, 80, 291, 360
Eco47I GGWCC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 96, 287
FaiI YATR 4 cut(s) 24, 94, 204, 285
FatI CATG 2 cut(s) 92, 283
FokI GGATG 1 cut(s) 170
FspBI CTAG 2 cut(s) 18, 357
Hin1II CATG 2 cut(s) 96, 287
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 303
HphI GGTGA 2 cut(s) 106, 112
Hpy166II GTNNAC 2 cut(s) 114, 265
Hpy188I TCNGA 2 cut(s) 136, 365
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 114, 265
HpyCH4III ACNGT 2 cut(s) 64, 118
HpyCH4IV ACGT 2 cut(s) 199, 258
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 2 cut(s) 199, 258
Hsp92II CATG 2 cut(s) 96, 287
Kzo9I GATC 4 cut(s) 12, 80, 291, 360
LpnPI CCDG 6 cut(s) 102, 231, 260, 287, 330, 336
MaeI CTAG 2 cut(s) 18, 357
MaeII ACGT 2 cut(s) 199, 258
MaeIII GTNAC 1 cut(s) 118
MalI GATC 4 cut(s) 14, 82, 293, 362
MboI GATC 4 cut(s) 12, 80, 291, 360
MboII GAAGA 3 cut(s) 52, 64, 173
MflI RGATCY 2 cut(s) 12, 80
MluCI AATT 3 cut(s) 234, 297, 307
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 319, 322
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
NdeII GATC 4 cut(s) 12, 80, 291, 360
NlaIII CATG 2 cut(s) 96, 287
NlaIV GGNNCC 2 cut(s) 14, 334
NmuCI GTSAC 1 cut(s) 118
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 14, 334
PspPI GGNCC 1 cut(s) 271
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
PsuI RGATCY 2 cut(s) 12, 80
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
Sau3AI GATC 4 cut(s) 12, 80, 291, 360
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 23, 107, 170, 202, 261
SinI GGWCC 1 cut(s) 271
Sse9I AATT 3 cut(s) 234, 297, 307
SsiI CCGC 1 cut(s) 174
SspMI CTAG 2 cut(s) 18, 357
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 64, 118
TaiI ACGT 2 cut(s) 202, 261
TasI AATT 3 cut(s) 234, 297, 307
TscAI CASTG 2 cut(s) 67, 225
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 114, 131, 174
TspRI CASTG 2 cut(s) 67, 225
VpaK11BI GGWCC 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 2 cut(s) 18, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.