Rroxscaffold_4G00302200

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000507
Physical Location & Seq
Reverse (-)
22591361 .. 22592814
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302200.1

Sequence Viewer

Length: 393 bp
ATGCCTTACGGGACGCTTGAAGTTGTTCTCGTGGATGCCAAGGACCTCTACGACACTGCTAATTTTCTCACCAAAATGGATGCTTATGTCATTTTCACTGTCAAGACCCAAGAGAAAACAAGCACTGTGGCTCAAGGGGAAGGAACCAACCCGGAATGGAATGAAAATTTTTTATTCACAGTGACAGATGATGTGACCGAACTCCGTTTGAAAATAATGGACAAAGACACCTTCACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGAGCGACAATTGTTCACTGACGGAAGCATTCCACCAACTTCATACAATGTTGTCAGCAAGCACCAGAAGTACCGTGGAGAGATCACAATTGGGCTCAATTTCACTCCTGATCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

130

Amino Acids

14.68

Weight (kDa)

4.45

Isoelectric Point (pI)

10.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 102 1.3e-21 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AclWI GGATC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 2 cut(s) 20, 211
AlwI GGATC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 61, 226
AvaII GGWCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 369
BauI CACGAG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 25, 70
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 385
BsaJI CCNNGG 2 cut(s) 39, 346
BseCI ATCGAT 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 39, 346
BseGI GGATG 2 cut(s) 40, 85
BshVI ATCGAT 1 cut(s) 385
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 354, 382, 386
BspACI CCGC 1 cut(s) 237
BspDI ATCGAT 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 39, 346
BssMI GATC 3 cut(s) 354, 382, 386
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 100, 127, 181, 347
BstC8I GCNNGC 1 cut(s) 332
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 2 cut(s) 40, 85
BstKTI GATC 3 cut(s) 357, 385, 389
BstMBI GATC 3 cut(s) 354, 382, 386
BstSCI CCNGG 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 385
BsuTUI ATCGAT 1 cut(s) 385
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 2 cut(s) 40, 85
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 5 cut(s) 54, 96, 123, 186, 288
Cac8I GCNNGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 385
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 343
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviJI RGCY 2 cut(s) 131, 367
CviKI_1 RGCY 2 cut(s) 131, 367
CviQI GTAC 1 cut(s) 343
DpnI GATC 3 cut(s) 356, 384, 388
DpnII GATC 3 cut(s) 354, 382, 386
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 2 cut(s) 87, 316
FaqI GGGAC 1 cut(s) 25
FokI GGATG 2 cut(s) 47, 92
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 1 cut(s) 272
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 22
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 61, 226
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 4 cut(s) 103, 272, 380, 390
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 134, 241
HpyCH4III ACNGT 4 cut(s) 100, 127, 181, 347
Kzo9I GATC 3 cut(s) 354, 382, 386
LpnPI CCDG 2 cut(s) 165, 350
LweI GCATC 2 cut(s) 25, 70
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 181, 193
MalI GATC 3 cut(s) 356, 384, 388
MboI GATC 3 cut(s) 354, 382, 386
MfeI CAATTG 2 cut(s) 281, 360
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 5 cut(s) 61, 166, 281, 360, 370
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 2 cut(s) 56, 279
MroXI GAANNNNTTC 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 2 cut(s) 281, 360
Mva1269I GAATGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 152
NdeII GATC 3 cut(s) 354, 382, 386
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 181, 193
PctI GAATGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 74
Sau3AI GATC 3 cut(s) 354, 382, 386
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 369
SetI ASST 2 cut(s) 48, 233
SfaNI GCATC 2 cut(s) 25, 70
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 5 cut(s) 61, 166, 281, 360, 370
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 4 cut(s) 100, 127, 181, 347
TaqI TCGA 1 cut(s) 385
TaqII GACCGA 1 cut(s) 212
TasI AATT 5 cut(s) 61, 166, 281, 360, 370
TscAI CASTG 5 cut(s) 61, 103, 130, 186, 295
TseFI GTSAC 2 cut(s) 181, 193
Tsp45I GTSAC 2 cut(s) 181, 193
TspDTI ATGAA 2 cut(s) 177, 303
TspGWI ACGGA 2 cut(s) 194, 309
TspRI CASTG 5 cut(s) 61, 103, 130, 186, 295
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.