Rw0G014910

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00664
OG0000507
Physical Location & Seq
Forward (+)
36891 .. 38701
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014910.1

Sequence Viewer

Length: 456 bp
ATGGCTTATGGGACGCTTGAAGTTGTTCTTGTTAATGCTAAAGGCCTCCACAACACTGATTTTCTCTCTAAAATGGATCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGCACTGTTGCCAAAGGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACGCCTTTACCGCTGATGATTATGTTGGAGAAGCAACCATTTCTTTAGAGCCAGTGTTCAATGTAGGAATTGTTCCACCAACTGCGTACAACGTTGTCAACAAGGACCAGGAATATCATGGGGAGATCAAAATTGGACTCAATTTCTCTCCTGAGCCGGAGACGAACAGCTTCTGTTCAGGACACTATGGGGGTGTTGAGGATTATGGTGGATGGAAAGAATCAACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

4.49

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 93 2.9e-21 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AclI AACGTT 1 cut(s) 315
AclWI GGATC 3 cut(s) 71, 84, 148
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 4 cut(s) 20, 100, 208, 283
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 2 cut(s) 165, 393
AluI AGCT 2 cut(s) 165, 393
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 3 cut(s) 71, 84, 148
AlwNI CAGNNNCTG 1 cut(s) 396
AoxI GGCC 1 cut(s) 43
Asp700I GAANNNNTTC 2 cut(s) 24, 392
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 166, 172
AvaII GGWCC 1 cut(s) 328
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 2 cut(s) 107, 228
BccI CCATC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 332
BpiI GAAGAC 2 cut(s) 107, 228
Bpu10I CCTNAGC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 223, 440
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 275
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 76, 140, 348
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 3 cut(s) 71, 84, 148
BsrI ACTGG 1 cut(s) 275
BssMI GATC 3 cut(s) 76, 140, 348
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 124, 178
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 223, 440
BstKTI GATC 3 cut(s) 79, 143, 351
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 3 cut(s) 76, 140, 348
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstV2I GAAGAC 2 cut(s) 107, 228
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 223, 440
BtsIMutI CAGTG 3 cut(s) 54, 120, 282
CaiI CAGNNNCTG 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 2 cut(s) 22, 233
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 153, 341
CviJI RGCY 6 cut(s) 5, 45, 165, 274, 379, 393
CviKI_1 RGCY 6 cut(s) 5, 45, 165, 274, 379, 393
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 375
DpnI GATC 3 cut(s) 78, 142, 350
DpnII GATC 3 cut(s) 76, 140, 348
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 2 cut(s) 156, 344
FaiI YATR 7 cut(s) 9, 84, 154, 246, 342, 411, 429
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 152, 340
FokI GGATG 2 cut(s) 230, 447
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 380
HgaI GACGC 2 cut(s) 22, 233
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 156, 344
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 360, 443
HpaII CCGG 1 cut(s) 380
HphI GGTGA 2 cut(s) 166, 172
Hpy166II GTNNAC 2 cut(s) 174, 322
Hpy188I TCNGA 2 cut(s) 145, 196
Hpy188III TCNNGA 2 cut(s) 374, 402
Hpy8I GTNNAC 2 cut(s) 174, 322
HpyCH4III ACNGT 2 cut(s) 124, 178
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 156, 344
Kzo9I GATC 3 cut(s) 76, 140, 348
LpnPI CCDG 7 cut(s) 162, 288, 317, 344, 387, 387, 393
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 78, 142, 350
MboI GATC 3 cut(s) 76, 140, 348
MboII GAAGA 3 cut(s) 112, 124, 233
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 3 cut(s) 291, 354, 364
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 56, 415
MroXI GAANNNNTTC 2 cut(s) 24, 392
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 3 cut(s) 76, 140, 348
NlaIII CATG 2 cut(s) 156, 344
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 178
PceI AGGCCT 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 24, 392
PfeI GAWTC 1 cut(s) 443
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 328
PsrI GAACNNNNNNTAC 2 cut(s) 279, 311
PstNI CAGNNNCTG 1 cut(s) 396
PsuI RGATCY 2 cut(s) 76, 140
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 3 cut(s) 76, 140, 348
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 332
SetI ASST 3 cut(s) 167, 318, 395
SinI GGWCC 1 cut(s) 328
Sse9I AATT 3 cut(s) 291, 354, 364
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 124, 178
TaiI ACGT 1 cut(s) 318
TasI AATT 3 cut(s) 291, 354, 364
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 61, 127, 282
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 174, 191, 234
TspRI CASTG 3 cut(s) 61, 127, 282
VpaK11BI GGWCC 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmnI GAANNNNTTC 2 cut(s) 24, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.