RchiOBHm_Chr1g0352961

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000507
Physical Location & Seq
Forward (+)
46322533 .. 46324332
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57861

Sequence Viewer

Length: 264 bp
ATGGGACGCTTGAAGTTGTTCTTGTTAATGCTAAAGGCCTCCACAACACTGATTTTCTCTCTAAAATGGATCCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGCACTGTTGCCAAAGGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACGCCTTTACCGCTGATGATTATGTTGGAGAAGCAACCATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

87

Amino Acids

9.82

Weight (kDa)

5.24

Isoelectric Point (pI)

12.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 25 - 87 4.4e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AclWI GGATC 3 cut(s) 64, 77, 142
AcyI GRCGYC 1 cut(s) 219
AgsI TTSAA 3 cut(s) 13, 94, 202
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AlwI GGATC 3 cut(s) 64, 77, 142
AoxI GGCC 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 160, 166
BamHI GGATCC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 101, 222
BmiI GGNNCC 1 cut(s) 71
BpiI GAAGAC 2 cut(s) 101, 222
BsaHI GRCGYC 1 cut(s) 219
BseGI GGATG 1 cut(s) 217
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 69, 134
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 3 cut(s) 64, 77, 142
BssMI GATC 2 cut(s) 69, 134
BssNI GRCGYC 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 118, 172
BstACI GRCGYC 1 cut(s) 219
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 72, 137
BstMBI GATC 2 cut(s) 69, 134
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV2I GAAGAC 2 cut(s) 101, 222
BstX2I RGATCY 2 cut(s) 69, 134
BstYI RGATCY 2 cut(s) 69, 134
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 47, 114
CseI GACGC 2 cut(s) 15, 227
CviAII CATG 1 cut(s) 147
CviJI RGCY 2 cut(s) 38, 159
CviKI_1 RGCY 2 cut(s) 38, 159
DpnI GATC 2 cut(s) 71, 136
DpnII GATC 2 cut(s) 69, 134
Eco147I AGGCCT 1 cut(s) 38
FaeI CATG 1 cut(s) 150
FaiI YATR 3 cut(s) 78, 148, 240
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 146
FokI GGATG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 2 cut(s) 15, 227
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 157
HphI GGTGA 2 cut(s) 160, 166
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 139, 190
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 118, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 69, 134
LpnPI CCDG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 71, 136
MboI GATC 2 cut(s) 69, 134
MboII GAAGA 3 cut(s) 106, 118, 227
MflI RGATCY 2 cut(s) 69, 134
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 69, 134
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 172
PceI AGGCCT 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 71
PsuI RGATCY 2 cut(s) 69, 134
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 69, 134
SetI ASST 1 cut(s) 161
SgeI CNNG 7 cut(s) 22, 34, 113, 143, 155, 159, 175
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 228
StuI AGGCCT 1 cut(s) 38
TaaI ACNGT 2 cut(s) 118, 172
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 54, 121
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 168, 185, 228
TspRI CASTG 2 cut(s) 54, 121
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.