pycom01g07420

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000507
Physical Location & Seq
Reverse (-)
8328151 .. 8328581
431 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07420.1

Sequence Viewer

Length: 186 bp
ATGGACAAAGATACATTTACCAAGGATGACTTTGTTGGCGAAGCAATCGTTCCTTTGGAGCCATTGTTCGCTGATGGAAGGCTTCCTCCGACTGCATACAATGTTGTCAACAAGGACCAGGAATATCGCGGGGAGATCATAATTGGACTTACTTTCTCTCCTGAGCCTCAGAGAAGCAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

62

Amino Acids

6.88

Weight (kDa)

4.34

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 117
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 115
AvaII GGWCC 1 cut(s) 115
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 142, 172
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 153, 182
Bsh1236I CGCG 1 cut(s) 129
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 154, 181
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 162, 168
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 115
CviJI RGCY 4 cut(s) 61, 82, 166, 180
CviKI_1 RGCY 4 cut(s) 61, 82, 166, 180
DdeI CTNAG 2 cut(s) 162, 168
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaiI YATR 2 cut(s) 97, 140
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 184
GluI GCNGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 90, 171
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 162, 168
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 104, 131, 174
MaeI CTAG 1 cut(s) 184
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MluCI AATT 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 96, 177
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 129
NdeII GATC 1 cut(s) 135
NlaIV GGNNCC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 115
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 119
SetI ASST 1 cut(s) 182
SgeI CNNG 7 cut(s) 34, 124, 130, 131, 140, 142, 173
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 21
TasI AATT 1 cut(s) 141
TseI GCWGC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 115
XspI CTAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.