Rw1G021350

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000507
Physical Location & Seq
Forward (+)
45582291 .. 45583280
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021350.1

Sequence Viewer

Length: 324 bp
ATGGATCCCTATGTCATTTTCTCTGTGAAGACCCAAGAGAAAATAAGCACTGTGGCCAAAGGCCAAGGATCTAACCCAGAATGGAATGAAAGCTTCTTATTCACAGTGACTGATGATGTGTCCGAACTTCGTTTGAAAATAATGGACAAAGGTACCTTTACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGACCCAGCATTGTTCATTCATGGAAGCCTTCCACCAACTTCATACAATGTTGTCAACAAGCACCAGAAATATCGCGGAGAAATCAAAATAGGACTCAATTTTACTCCTGATCCTCAGAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

107

Amino Acids

12.01

Weight (kDa)

4.99

Isoelectric Point (pI)

13.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 1 - 75 7.3e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 162, 273
AclWI GGATC 3 cut(s) 12, 76, 302
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
AlwI GGATC 3 cut(s) 12, 76, 302
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 54, 61
Asp718I GGTACC 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 35
BfaI CTAG 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 6, 154
BpiI GAAGAC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 56, 63
BshNI GGYRCC 1 cut(s) 152
BsnI GGCC 2 cut(s) 56, 63
Bsp143I GATC 3 cut(s) 4, 68, 307
BspACI CCGC 2 cut(s) 162, 273
BspANI GGCC 2 cut(s) 56, 63
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 6, 154
BspPI GGATC 3 cut(s) 12, 76, 302
BspT107I GGYRCC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 3 cut(s) 4, 68, 307
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 52, 106
BstDEI CTNAG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 3 cut(s) 7, 71, 310
BstMBI GATC 3 cut(s) 4, 68, 307
BstUI CGCG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 4, 68
BstYI RGATCY 2 cut(s) 4, 68
BsuRI GGCC 2 cut(s) 56, 63
BtsIMutI CAGTG 2 cut(s) 48, 111
CaiI CAGNNNCTG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 56, 63, 93, 225
CviKI_1 RGCY 4 cut(s) 56, 63, 93, 225
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 6, 70, 309
DpnII GATC 3 cut(s) 4, 68, 307
EaeI YGGCCR 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 12, 219, 241
FatI CATG 1 cut(s) 217
FspBI CTAG 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 56, 63
Hin1II CATG 1 cut(s) 221
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 124, 315
Hpy188III TCNNGA 2 cut(s) 197, 305
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 52, 106
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 1 cut(s) 221
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 4, 68, 307
LpnPI CCDG 4 cut(s) 90, 216, 275, 318
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 6, 70, 309
MboI GATC 3 cut(s) 4, 68, 307
MboII GAAGA 1 cut(s) 40
MflI RGATCY 2 cut(s) 4, 68
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 295
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 204, 321
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MvnI CGCG 1 cut(s) 273
NdeII GATC 3 cut(s) 4, 68, 307
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 6, 154
NmuCI GTSAC 1 cut(s) 106
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 6, 154
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 2 cut(s) 4, 68
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
Sau3AI GATC 3 cut(s) 4, 68, 307
SchI GAGTC 1 cut(s) 285
SetI ASST 3 cut(s) 95, 154, 158
Sse9I AATT 1 cut(s) 295
SsiI CCGC 2 cut(s) 162, 273
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 52, 106
TasI AATT 1 cut(s) 295
TscAI CASTG 2 cut(s) 55, 111
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 102, 202, 206, 228
TspRI CASTG 2 cut(s) 55, 111
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.