Rroxscaffold_4G00302220

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000507
Physical Location & Seq
Reverse (-)
22612948 .. 22618821
5874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302220.1

Sequence Viewer

Length: 216 bp
ATGATGGAGGCCATCCATGGTGTCATGGATAGGGACTACGCCAGCCCTAGGCTGGTGGTGGATGGAGGCGTGCCTAGGCAGCAGCGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGACGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACACCTTTACCGCTGATGATTATGTTGGAGAAGCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

71

Amino Acids

7.99

Weight (kDa)

4.24

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 29 - 71 1.6e-08 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 85, 186
AclWI GGATC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 48, 52
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 79, 82
AspA2I CCTAGG 2 cut(s) 47, 74
AsuHPI GGTGA 2 cut(s) 118, 124
AvrII CCTAGG 2 cut(s) 47, 74
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 91, 94
BccI CCATC 2 cut(s) 20, 56
BfaI CTAG 2 cut(s) 48, 75
BisI GCNGC 3 cut(s) 80, 83, 86
BlnI CCTAGG 2 cut(s) 47, 74
BlsI GCNGC 3 cut(s) 81, 84, 87
BpiI GAAGAC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 16, 47, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 52
BseDI CCNNGG 3 cut(s) 16, 47, 74
BseGI GGATG 3 cut(s) 12, 67, 175
BseLI CCNNNNNNNGG 2 cut(s) 48, 52
BseXI GCAGC 2 cut(s) 91, 94
BshFI GGCC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 48, 52
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 85, 186
BspANI GGCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 16, 47, 74
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 3 cut(s) 16, 47, 74
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 43, 71
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 3 cut(s) 12, 67, 175
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 79, 85
BstV1I GCAGC 2 cut(s) 91, 94
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 12, 67, 175
Cac8I GCNNGC 2 cut(s) 43, 71
CviAII CATG 3 cut(s) 17, 25, 105
CviJI RGCY 4 cut(s) 11, 45, 52, 117
CviKI_1 RGCY 4 cut(s) 11, 45, 52, 117
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco130I CCWWGG 3 cut(s) 16, 47, 74
EcoT14I CCWWGG 3 cut(s) 16, 47, 74
ErhI CCWWGG 3 cut(s) 16, 47, 74
FaeI CATG 3 cut(s) 20, 28, 108
FaiI YATR 4 cut(s) 18, 26, 106, 198
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 16, 24, 104
Fnu4HI GCNGC 3 cut(s) 80, 83, 86
FokI GGATG 2 cut(s) 74, 182
Fsp4HI GCNGC 3 cut(s) 80, 83, 86
FspBI CTAG 2 cut(s) 48, 75
GluI GCNGC 3 cut(s) 80, 83, 86
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 3 cut(s) 20, 28, 108
HindIII AAGCTT 1 cut(s) 115
HphI GGTGA 2 cut(s) 118, 124
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 97, 148
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 141, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 85
HpySE526I ACGT 2 cut(s) 141, 212
Hsp92II CATG 3 cut(s) 20, 28, 108
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 38, 55, 114
Lsp1109I GCAGC 2 cut(s) 91, 94
MaeI CTAG 2 cut(s) 48, 75
MaeII ACGT 2 cut(s) 141, 212
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 1 cut(s) 185
MflI RGATCY 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 85, 188
MwoI GCNNNNNNNGC 2 cut(s) 79, 85
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 92
NlaIII CATG 3 cut(s) 20, 28, 108
NmuCI GTSAC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 81, 84, 87
PsuI RGATCY 1 cut(s) 92
SatI GCNGC 3 cut(s) 80, 83, 86
Sau3AI GATC 1 cut(s) 92
SetI ASST 4 cut(s) 119, 144, 182, 215
SsiI CCGC 2 cut(s) 85, 186
SspMI CTAG 2 cut(s) 48, 75
StyI CCWWGG 3 cut(s) 16, 47, 74
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 144, 215
TauI GCSGC 1 cut(s) 88
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 79, 82
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 126, 143, 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmaJI CCTAGG 2 cut(s) 47, 74
XspI CTAG 2 cut(s) 48, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.