Rorug01G0232400

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Reverse (-)
33422639 .. 33423187
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232400.1

Sequence Viewer

Length: 549 bp
ATGAATGCAAAGATATTGACAGCGCTAAACTTTCCAACAGATGACCTTCTGGATTTCGTTACGGCCAAAGGAAGAACTATGAGTCCTGGAAAAGGTAAGTGGACTTTAGCAATTTCAAAATCCATAGATGCTGACAAAGTCAGAAAGATGCTTTTGACATTAGAAATGACAGTAAACGAGGGTCTATTGAAGTTTAATTTTCGAGAGCCTCGTACAGTAGATAGGCAATCTGATAAAAGGGAGACTAGCTCTTTTGTTGTGGAGTCAGAAATATATGGAAGAGCTGATGACAAAGAGGAGTTAGTGAAACTGTTACTATCTTCTGAGTGTCACCAGGATGGTCATGCTATGTGTATTCCGATAATTGGTATTGGAGGAATTGGCAAGACGACTCTTGCTCAGTTGGCATATAATGATGAGCGGGTAATCCAACATTTTGATGTTAGGCTGTGGACTTTTGTCTCGGATGATTTCAATATCAAGAAGATCATGAAGTCAATTATTGAGTCTATAACAAGGGAAGATTGCAAGTTCTCGGAGAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

182

Amino Acids

20.62

Weight (kDa)

5.71

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 97 - 175 1.3e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 421
AciI CCGC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 214
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 92, 365
AgsI TTSAA 3 cut(s) 117, 190, 475
AjnI CCWGG 2 cut(s) 85, 333
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 249, 284
AluI AGCT 2 cut(s) 249, 284
Alw26I GTCTC 2 cut(s) 236, 466
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 323
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 87, 335
BcoDI GTCTC 2 cut(s) 236, 466
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 87, 335
BmrFI CCNGG 2 cut(s) 87, 335
BmsI GCATC 2 cut(s) 118, 138
BoxI GACNNNNGTC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 365
BseBI CCWGG 2 cut(s) 87, 335
BseGI GGATG 2 cut(s) 343, 472
BseLI CCNNNNNNNGG 2 cut(s) 92, 365
BseMII CTCAG 2 cut(s) 315, 413
BseRI GAGGAG 1 cut(s) 311
BshFI GGCC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 92, 365
BsmAI GTCTC 2 cut(s) 236, 466
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 486
BspACI CCGC 1 cut(s) 421
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 316, 412
BspHI TCATGA 1 cut(s) 489
BspQI GCTCTTC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 421
BssMI GATC 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 87, 335
Bst4CI ACNGT 3 cut(s) 172, 217, 312
Bst6I CTCTTC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 324, 399
BstENI CCTNNNNNAGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 343, 472
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 489
BstMAI GTCTC 2 cut(s) 236, 466
BstMBI GATC 1 cut(s) 486
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 87, 335
BstPAI GACNNNNGTC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 85, 333
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 343, 472
CciI TCATGA 1 cut(s) 489
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 344, 490
CviJI RGCY 5 cut(s) 65, 208, 249, 284, 448
CviKI_1 RGCY 5 cut(s) 65, 208, 249, 284, 448
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 324, 399
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 85, 333
FaeI CATG 2 cut(s) 347, 493
FatI CATG 2 cut(s) 343, 489
FauI CCCGC 1 cut(s) 414
FokI GGATG 2 cut(s) 350, 479
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 65
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 347, 493
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 4 cut(s) 82, 263, 391, 506
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 102, 175, 453
Hpy188I TCNGA 7 cut(s) 143, 232, 268, 325, 360, 466, 538
Hpy188III TCNNGA 4 cut(s) 50, 203, 481, 490
Hpy8I GTNNAC 3 cut(s) 102, 175, 453
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 172, 217, 312
HpyCH4V TGCA 2 cut(s) 8, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 324, 399
Hsp92II CATG 2 cut(s) 347, 493
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 486
LguI GCTCTTC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 35, 72, 99, 320, 347
LweI GCATC 2 cut(s) 118, 138
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 4 cut(s) 58, 312, 329, 542
MalI GATC 1 cut(s) 488
MbiI CCGCTC 1 cut(s) 421
MboI GATC 1 cut(s) 486
MboII GAAGA 5 cut(s) 84, 291, 312, 496, 533
MluCI AATT 5 cut(s) 111, 196, 363, 378, 498
MlyI GAGTC 4 cut(s) 91, 272, 385, 515
MmeI TCCRAC 2 cut(s) 59, 454
MnlI CCTC 4 cut(s) 172, 219, 289, 368
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 336, 438
MspR9I CCNGG 2 cut(s) 87, 335
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 87, 335
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 1 cut(s) 486
NlaIII CATG 2 cut(s) 347, 493
NmuCI GTSAC 2 cut(s) 329, 542
PagI TCATGA 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PctI GAATGC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 85
PleI GAGTC 4 cut(s) 90, 271, 385, 514
PpsI GAGTC 4 cut(s) 90, 271, 385, 514
PshAI GACNNNNGTC 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 85, 333
PspGI CCWGG 2 cut(s) 85, 333
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 336, 438
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 486
SchI GAGTC 4 cut(s) 91, 272, 385, 515
ScrFI CCNGG 2 cut(s) 87, 335
SetI ASST 4 cut(s) 48, 97, 251, 286
SfaNI GCATC 2 cut(s) 118, 138
SmiMI CAYNNNNRTG 2 cut(s) 336, 438
Sse9I AATT 5 cut(s) 111, 196, 363, 378, 498
SsiI CCGC 1 cut(s) 421
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 85, 333
TaaI ACNGT 3 cut(s) 172, 217, 312
TaqI TCGA 1 cut(s) 202
TasI AATT 5 cut(s) 111, 196, 363, 378, 498
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 2 cut(s) 329, 542
Tsp45I GTSAC 2 cut(s) 329, 542
TspDTI ATGAA 2 cut(s) 17, 506
Tth111I GACNNNGTC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 90
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.