Rmu_sc0005122.1_g000002

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005122.1
OG0000507
Physical Location & Seq
Reverse (-)
10355 .. 10961
607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005122.1_g000002.1.cds

Sequence Viewer

Length: 375 bp
atgcttgattttacagccaaaatggatccttatgtcattttcactgtcaagacccaagagaaaacaagcactgtggctcaaggggaaggaaccaacccggaatggaatgaaaattttttattcacagtgacagatgatgtgaccgaactccgtttgaaaataatggacaaagacaccttcactgcagatgattttgttggggaagcaaccattcctctagagccacaattgttcactgaaggaagcattccaccaacttcatacaatgttgtcagcaagcaccagaagtaccgtggagagatcacaattgggctcaatttcactcctgatcctgaggtattatctgatcacttatccaagttcgctgcttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

4.44

Isoelectric Point (pI)

11.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 20, 33, 323
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 157
AlwI GGATC 3 cut(s) 20, 33, 323
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 333
BamHI GGATCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 352
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 27, 91
BmrFI CCNGG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 292
Bse21I CCTNAGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 98
BsmI GAATGC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 4 cut(s) 25, 300, 328, 346
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 27, 91
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 3 cut(s) 20, 33, 323
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 25, 300, 328, 346
Bst4CI ACNGT 4 cut(s) 46, 73, 127, 293
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 292
BstKTI GATC 4 cut(s) 28, 303, 331, 349
BstMBI GATC 4 cut(s) 25, 300, 328, 346
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 5 cut(s) 42, 69, 132, 180, 234
Cac8I GCNNGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 289
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviJI RGCY 4 cut(s) 17, 77, 223, 313
CviKI_1 RGCY 4 cut(s) 17, 77, 223, 313
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 27, 302, 330, 348
DpnII GATC 4 cut(s) 25, 300, 328, 346
Eco24I GRGCYC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 315
FaiI YATR 2 cut(s) 33, 262
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 366
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 366
HapII CCGG 1 cut(s) 98
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 49, 218, 326, 332
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 80, 187, 233
HpyCH4III ACNGT 4 cut(s) 46, 73, 127, 293
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 4 cut(s) 25, 300, 328, 346
LpnPI CCDG 4 cut(s) 111, 296, 339, 345
Lsp1109I GCAGC 1 cut(s) 352
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 127, 139
MalI GATC 4 cut(s) 27, 302, 330, 348
MboI GATC 4 cut(s) 25, 300, 328, 346
MfeI CAATTG 2 cut(s) 227, 306
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 112, 227, 306, 316
MnlI CCTC 2 cut(s) 225, 328
MseI TTAA 1 cut(s) 373
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 2 cut(s) 227, 306
Mva1269I GAATGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 98
NdeII GATC 4 cut(s) 25, 300, 328, 346
NlaIV GGNNCC 2 cut(s) 27, 91
NmuCI GTSAC 2 cut(s) 127, 139
PctI GAATGC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 27, 91
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 4 cut(s) 25, 300, 328, 346
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 315
SetI ASST 2 cut(s) 179, 339
SfcI CTRYAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 4 cut(s) 112, 227, 306, 316
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 4 cut(s) 46, 73, 127, 293
TaqII GACCGA 1 cut(s) 158
TasI AATT 4 cut(s) 112, 227, 306, 316
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 5 cut(s) 49, 76, 132, 187, 241
TseFI GTSAC 2 cut(s) 127, 139
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 2 cut(s) 127, 139
TspDTI ATGAA 2 cut(s) 123, 249
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 5 cut(s) 49, 76, 132, 187, 241
XapI RAATTY 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.