Rh1CG229700

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000507
Physical Location & Seq
Forward (+)
48489550 .. 48492249
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG229700.1

Sequence Viewer

Length: 723 bp
ATGCCTCATGGAACGCTTGAAGTCCTTCTGGTTGGGGCCAAAGACCTTGAAGACGATGATTTTTTCGGTAAAATGGATCCCTACGTCATTTTAACCTTACGGACTCAAGAGAAGAAAAGCACTGTGGTAGAAGGGCAAGGATCTGAACCAGAATGGAATGAAACTTTTCAATTCACGGTCTCATCGGATGATGTTACCGAACTCAACTTAAAAATAATGGACAAAGATACCTTCAGCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTTTAGAATCAGTGTTCATGAAAGGAAACATAGCACCATCTAAATACAATGTTGTCAATGCGGAAAAGGAATATCATGGAGAGATTACAGTTGGACTCGTTTTCTCCCCTGAGAGAACTAGCCATCGTGCAGTCGACTGTGATGAATATGGGGGGAGTCATGGTGGCTCTAGGAGGAGACATGGCGATTCCAGGGAGGAGAGGTATGGTGATGACTATCAGGGGAGCTACGGTGATGACTCAAGGAGGAACCATGGTGACTCTAGGGAGAGGTATGGTCATGATGACTCTAGGAGGGGCGGCCATGGTGACTCTAGGGAGAGGTATGATGATGATGACTGCGGGGGAGGCTATGGTGATTCCAGGGGAAGGAGTGGTGGACGGAGAGAGTCATCTAGGTATGAGAAGGAGGAGGAAAGCTATGGTGGATACAAGGAATCATCGTACCGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

240

Amino Acids

27.05

Weight (kDa)

4.79

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 99 7.7e-25 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 329, 567, 609
AclWI GGATC 3 cut(s) 71, 84, 148
AcoI YGGCCR 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 3 cut(s) 20, 50, 170
AjnI CCWGG 2 cut(s) 458, 629
AluBI AGCT 2 cut(s) 495, 687
AluI AGCT 2 cut(s) 495, 687
Alw26I GTCTC 2 cut(s) 184, 439
AlwI GGATC 3 cut(s) 71, 84, 148
AoxI GGCC 2 cut(s) 36, 568
Asp700I GAANNNNTTC 2 cut(s) 24, 165
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 5 cut(s) 488, 512, 536, 587, 635
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 2 cut(s) 313, 399
BciT130I CCWGG 2 cut(s) 460, 631
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 2 cut(s) 184, 439
BfaI CTAG 6 cut(s) 387, 438, 531, 558, 582, 663
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 1 cut(s) 568
BlsI GCNGC 1 cut(s) 569
Bme1390I CCNGG 2 cut(s) 460, 631
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 3 cut(s) 37, 78, 518
BmrFI CCNGG 2 cut(s) 460, 631
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 90, 493
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 4 cut(s) 459, 520, 571, 630
BsaXI ACNNNNNCTCC 6 cut(s) 415, 445, 455, 484, 485, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 460, 631
BseDI CCNNGG 4 cut(s) 459, 520, 571, 630
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 3 cut(s) 457, 479, 692
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 2 cut(s) 38, 570
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 184, 439
BsnI GGCC 2 cut(s) 38, 570
Bso31I GGTCTC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 76, 140
Bsp19I CCATGG 2 cut(s) 520, 571
BspACI CCGC 3 cut(s) 329, 567, 609
BspANI GGCC 2 cut(s) 38, 570
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 2 cut(s) 285, 547
BspLI GGNNCC 3 cut(s) 37, 78, 518
BspPI GGATC 3 cut(s) 71, 84, 148
BspTNI GGTCTC 1 cut(s) 184
BssECI CCNNGG 4 cut(s) 459, 520, 571, 630
BssMI GATC 2 cut(s) 76, 140
BssT1I CCWWGG 2 cut(s) 520, 571
Bst2UI CCWGG 2 cut(s) 460, 631
Bst4CI ACNGT 5 cut(s) 124, 178, 358, 407, 500
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 2 cut(s) 520, 571
BstF5I GGATG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 79, 143
BstMAI GTCTC 2 cut(s) 184, 439
BstMBI GATC 2 cut(s) 76, 140
BstMWI GCNNNNNNNGC 1 cut(s) 615
BstNI CCWGG 2 cut(s) 460, 631
BstSCI CCNGG 2 cut(s) 458, 629
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 76, 140
BstYI RGATCY 2 cut(s) 76, 140
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 38, 570
BtgI CCRYGG 2 cut(s) 520, 571
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 120, 285
CciI TCATGA 2 cut(s) 285, 547
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 712
CviAII CATG 8 cut(s) 8, 286, 344, 428, 449, 521, 548, 572
CviJI RGCY 7 cut(s) 38, 390, 435, 495, 570, 618, 687
CviKI_1 RGCY 7 cut(s) 38, 390, 435, 495, 570, 618, 687
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 78, 142
DpnII GATC 2 cut(s) 76, 140
EaeI YGGCCR 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 520, 571
Eco31I GGTCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 458, 629
EcoT14I CCWWGG 2 cut(s) 520, 571
ErhI CCWWGG 2 cut(s) 520, 571
FaeI CATG 8 cut(s) 11, 289, 347, 431, 452, 524, 551, 575
FatI CATG 8 cut(s) 7, 285, 343, 427, 448, 520, 547, 571
FauI CCCGC 1 cut(s) 602
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 568
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 568
FspBI CTAG 6 cut(s) 387, 438, 531, 558, 582, 663
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 568
HaeIII GGCC 2 cut(s) 38, 570
HhaI GCGC 1 cut(s) 239
Hin1II CATG 8 cut(s) 11, 289, 347, 431, 452, 524, 551, 575
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HphI GGTGA 5 cut(s) 488, 512, 536, 587, 635
Hpy166II GTNNAC 2 cut(s) 403, 647
Hpy188I TCNGA 2 cut(s) 145, 187
Hpy188III TCNNGA 3 cut(s) 107, 286, 548
Hpy8I GTNNAC 2 cut(s) 403, 647
HpyAV CCTTC 5 cut(s) 35, 125, 241, 630, 667
HpyCH4III ACNGT 5 cut(s) 124, 178, 358, 407, 500
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 615
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 8 cut(s) 11, 289, 347, 431, 452, 524, 551, 575
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 76, 140
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 8 cut(s) 14, 162, 390, 445, 472, 473, 616, 643
MaeI CTAG 6 cut(s) 387, 438, 531, 558, 582, 663
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 193, 524, 575
MalI GATC 2 cut(s) 78, 142
MboI GATC 2 cut(s) 76, 140
MboII GAAGA 2 cut(s) 62, 124
MflI RGATCY 2 cut(s) 76, 140
MluCI AATT 1 cut(s) 170
MlyI GAGTC 8 cut(s) 97, 357, 433, 500, 521, 548, 572, 665
MmeI TCCRAC 2 cut(s) 232, 340
MroXI GAANNNNTTC 2 cut(s) 24, 165
MseI TTAA 2 cut(s) 92, 209
MspR9I CCNGG 2 cut(s) 460, 631
MvaI CCWGG 2 cut(s) 460, 631
MwoI GCNNNNNNNGC 1 cut(s) 615
NcoI CCATGG 2 cut(s) 520, 571
NdeII GATC 2 cut(s) 76, 140
NlaIII CATG 8 cut(s) 11, 289, 347, 431, 452, 524, 551, 575
NlaIV GGNNCC 3 cut(s) 37, 78, 518
NmuCI GTSAC 2 cut(s) 524, 575
PagI TCATGA 2 cut(s) 285, 547
PdmI GAANNNNTTC 2 cut(s) 24, 165
PfeI GAWTC 4 cut(s) 275, 455, 626, 704
PkrI GCNGC 1 cut(s) 569
PleI GAGTC 8 cut(s) 97, 357, 432, 500, 521, 548, 572, 664
PpsI GAGTC 8 cut(s) 97, 357, 432, 500, 521, 548, 572, 664
Psp6I CCWGG 2 cut(s) 458, 629
PspGI CCWGG 2 cut(s) 458, 629
PspN4I GGNNCC 3 cut(s) 37, 78, 518
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 2 cut(s) 76, 140
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 92, 209
SatI GCNGC 1 cut(s) 568
Sau3AI GATC 2 cut(s) 76, 140
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 8 cut(s) 97, 357, 433, 500, 521, 548, 572, 665
ScrFI CCNGG 2 cut(s) 460, 631
SmlI CTYRAG 2 cut(s) 105, 508
SmoI CTYRAG 2 cut(s) 105, 508
Sse9I AATT 1 cut(s) 170
SsiI CCGC 3 cut(s) 329, 567, 609
SspMI CTAG 6 cut(s) 387, 438, 531, 558, 582, 663
StyD4I CCNGG 2 cut(s) 458, 629
StyI CCWWGG 2 cut(s) 520, 571
TaaI ACNGT 5 cut(s) 124, 178, 358, 407, 500
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 4 cut(s) 275, 455, 626, 704
Tru1I TTAA 2 cut(s) 92, 209
Tru9I TTAA 2 cut(s) 92, 209
TscAI CASTG 2 cut(s) 127, 285
TseFI GTSAC 2 cut(s) 524, 575
Tsp45I GTSAC 2 cut(s) 524, 575
TspDTI ATGAA 4 cut(s) 174, 274, 302, 426
TspGWI ACGGA 2 cut(s) 115, 664
TspRI CASTG 2 cut(s) 127, 285
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 2 cut(s) 24, 165
XspI CTAG 6 cut(s) 387, 438, 531, 558, 582, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.