Rorug01G0233300

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000507
Physical Location & Seq
Forward (+)
33536287 .. 33537332
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0233300.1

Sequence Viewer

Length: 840 bp
ATGTTTCGGTTATTCAGTTACTCTCTCTCCCTCTTTATCTTCTTCCTCAAATTCCAGCCATGCATACCCACCAGAACAGTCCCCAAAAACACCGGAATATCAGAGATAATTGCAGCACCGAAATGTGGTGCACCACCACCTGACATGAGCTCAAATACATTGCATGGCACGAAACATTACGTGTATTTCCCCGGAAAACCTCGGTGGGTCCCACGCACGATGCCCATGAGACTCACCTACGCTTTCTCGGCGGAGAACATGATCAGTTACTTGAGCTCGTCCGATATCCGAGACGCATTTAAACGCTCTTTTGATCGTTGGGCGTCGGTTATTCCGGTGAGCTTCTTCGAGACAGAAGACTACGGCTTCTCGGATATCAAAATAGGGTTTTACGCCGGGGACCACGGCGACGGAGAGCCTTTCGACGGTGTGCTTGGGATTTTAGCCCACTCGTTTTCGCCGGAGACCGGGAGGCTCCACCTTGATGCGGTGGAGACGTGGGCAGTGGACTTTAGGTCGGAGAAATCGGCGGTGGCTGTCGATTTAGAGTCCGTGGCGACTCATGAGATCGGGCATTTGCTAGGGTTAGGGCATAGTTTGGTGAAAGAGGCTGTGATGTACCCGAGTTTGAAGCCTAGGGAAAAGAAGGTTGATTTACAGGTTGATGATGTTGAAGGAGTGCAAGCTTTGTATGGATCGAACCCCAATTATACATTCAGTGCTTTATCAGAGTCAGAATACAGTACTTCAACAAATCTGGGCGTTGATTTCAGGAGTAGACCATCAAGATGGGAAAATTTCGTCTTTGTTTTGGTTATCTGGTTGTGCATTTACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

279

Amino Acids

31.43

Weight (kDa)

5.76

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 77 - 232 9.2e-48 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 778
AciI CCGC 3 cut(s) 251, 488, 530
AclWI GGATC 1 cut(s) 703
AcsI RAATTY 2 cut(s) 50, 796
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 2 cut(s) 620, 745
AfiI CCNNNNNNNGG 4 cut(s) 125, 425, 467, 487
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 3 cut(s) 631, 674, 750
AhdI GACNNNNNGTC 1 cut(s) 514
AjiI CACGTC 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 150, 276, 342, 686
AluI AGCT 4 cut(s) 150, 276, 342, 686
Alw21I GWGCWC 3 cut(s) 133, 152, 278
Alw26I GTCTC 5 cut(s) 223, 285, 344, 458, 488
Alw44I GTGCAC 1 cut(s) 129
AlwI GGATC 1 cut(s) 703
Ama87I CYCGRG 1 cut(s) 622
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 50, 796
AspA2I CCTAGG 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 208, 400
AsuC2I CCSGG 3 cut(s) 192, 397, 469
AsuHPI GGTGA 3 cut(s) 226, 349, 613
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 2 cut(s) 208, 400
AvrII CCTAGG 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 152, 278
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 133, 152, 278
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 783, 790
BceAI ACGGC 2 cut(s) 379, 421
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 3 cut(s) 192, 397, 469
BcoDI GTCTC 5 cut(s) 223, 285, 344, 458, 488
BfaI CTAG 2 cut(s) 581, 636
BisI GCNGC 1 cut(s) 114
BlnI CCTAGG 1 cut(s) 635
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 745
Bme1390I CCNGG 3 cut(s) 192, 397, 469
Bme18I GGWCC 2 cut(s) 208, 400
BmeRI GACNNNNNGTC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 622
BmgBI CACGTC 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 208, 400
BmiI GGNNCC 4 cut(s) 209, 210, 401, 476
BmrFI CCNGG 3 cut(s) 192, 397, 469
BmsI GCATC 2 cut(s) 210, 475
BpiI GAAGAC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 3 cut(s) 192, 397, 469
BsaAI YACGTR 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 6 cut(s) 190, 200, 396, 403, 552, 635
BsaWI WCCGGW 2 cut(s) 92, 334
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 425, 467, 487
Bse3DI GCAATG 1 cut(s) 158
BseDI CCNNGG 6 cut(s) 190, 200, 396, 403, 552, 635
BseLI CCNNNNNNNGG 4 cut(s) 125, 425, 467, 487
BseMI GCAATG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 125
BsiHKAI GWGCWC 3 cut(s) 133, 152, 278
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 6 cut(s) 93, 192, 335, 396, 461, 468
BslFI GGGAC 3 cut(s) 65, 194, 413
BslI CCNNNNNNNGG 4 cut(s) 125, 425, 467, 487
BsmAI GTCTC 5 cut(s) 223, 285, 344, 458, 488
BsmBI CGTCTC 2 cut(s) 285, 488
BsmFI GGGAC 3 cut(s) 65, 194, 413
Bso31I GGTCTC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 3 cut(s) 133, 152, 278
Bsp143I GATC 4 cut(s) 261, 313, 567, 695
BspACI CCGC 3 cut(s) 251, 488, 530
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 209, 210, 401, 476
BspPI GGATC 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 158
BssECI CCNNGG 6 cut(s) 190, 200, 396, 403, 552, 635
BssMI GATC 4 cut(s) 261, 313, 567, 695
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 635
Bst4CI ACNGT 3 cut(s) 79, 428, 743
BstACI GRCGYC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 684
BstDSI CCRYGG 2 cut(s) 403, 552
BstKTI GATC 4 cut(s) 264, 316, 570, 698
BstMAI GTCTC 5 cut(s) 223, 285, 344, 458, 488
BstMBI GATC 4 cut(s) 261, 313, 567, 695
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 190, 395, 467
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 789
BtgI CCRYGG 2 cut(s) 403, 552
BtrI CACGTC 1 cut(s) 498
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 510, 724
Cac8I GCNNGC 1 cut(s) 684
CciI TCATGA 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 208, 400
CseI GACGC 2 cut(s) 302, 312
Csp6I GTAC 2 cut(s) 619, 744
CviAII CATG 6 cut(s) 60, 145, 164, 226, 259, 563
CviQI GTAC 2 cut(s) 619, 744
DpnI GATC 4 cut(s) 263, 315, 569, 697
DpnII GATC 4 cut(s) 261, 313, 567, 695
DraI TTTAAA 1 cut(s) 301
DriI GACNNNNNGTC 1 cut(s) 514
Eam1105I GACNNNNNGTC 1 cut(s) 514
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 2 cut(s) 150, 276
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 2 cut(s) 152, 278
Eco31I GGTCTC 1 cut(s) 458
Eco32I GATATC 2 cut(s) 286, 376
Eco47I GGWCC 2 cut(s) 208, 400
Eco53kI GAGCTC 2 cut(s) 150, 276
Eco88I CYCGRG 1 cut(s) 622
EcoICRI GAGCTC 2 cut(s) 150, 276
EcoO109I RGGNCCY 1 cut(s) 208
EcoRV GATATC 2 cut(s) 286, 376
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 152, 278
ErhI CCWWGG 1 cut(s) 635
Esp3I CGTCTC 2 cut(s) 285, 488
FaeI CATG 6 cut(s) 63, 148, 167, 229, 262, 566
FaqI GGGAC 3 cut(s) 65, 194, 413
FatI CATG 6 cut(s) 59, 144, 163, 225, 258, 562
FbaI TGATCA 1 cut(s) 261
FblI GTMKAC 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 114
FriOI GRGCYC 2 cut(s) 152, 278
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 581, 636
GluI GCNGC 1 cut(s) 114
HapII CCGG 6 cut(s) 93, 192, 335, 396, 461, 468
HgaI GACGC 2 cut(s) 302, 312
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 6 cut(s) 63, 148, 167, 229, 262, 566
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 4 cut(s) 231, 548, 559, 731
HpaII CCGG 6 cut(s) 93, 192, 335, 396, 461, 468
HphI GGTGA 3 cut(s) 226, 349, 613
Hpy166II GTNNAC 3 cut(s) 131, 508, 779
Hpy188I TCNGA 7 cut(s) 103, 283, 290, 373, 520, 730, 736
Hpy188III TCNNGA 4 cut(s) 349, 563, 772, 786
Hpy8I GTNNAC 3 cut(s) 131, 508, 779
Hpy99I CGWCG 3 cut(s) 328, 413, 428
HpyAV CCTTC 2 cut(s) 640, 668
HpyCH4III ACNGT 3 cut(s) 79, 428, 743
HpyCH4IV ACGT 2 cut(s) 180, 497
HpyCH4V TGCA 6 cut(s) 63, 113, 131, 163, 682, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 180, 497
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 6 cut(s) 63, 148, 167, 229, 262, 566
KflI GGGWCCC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 4 cut(s) 261, 313, 567, 695
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 210, 475
MaeI CTAG 2 cut(s) 581, 636
MaeII ACGT 2 cut(s) 180, 497
MaeIII GTNAC 2 cut(s) 17, 266
MalI GATC 4 cut(s) 263, 315, 569, 697
MboI GATC 4 cut(s) 261, 313, 567, 695
MboII GAAGA 4 cut(s) 31, 34, 337, 368
MhlI GDGCHC 3 cut(s) 133, 152, 278
MluCI AATT 4 cut(s) 50, 108, 706, 796
MlyI GAGTC 4 cut(s) 225, 553, 557, 740
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 5 cut(s) 41, 56, 210, 465, 601
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 3 cut(s) 121, 483, 787
MspI CCGG 6 cut(s) 93, 192, 335, 396, 461, 468
MspR9I CCNGG 3 cut(s) 192, 397, 469
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 3 cut(s) 192, 397, 469
NdeII GATC 4 cut(s) 261, 313, 567, 695
NlaIII CATG 6 cut(s) 63, 148, 167, 229, 262, 566
NlaIV GGNNCC 4 cut(s) 209, 210, 401, 476
NmeAIII GCCGAG 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 65
PagI TCATGA 1 cut(s) 562
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 4 cut(s) 225, 553, 556, 739
PpsI GAGTC 4 cut(s) 225, 553, 556, 739
Ppu21I YACGTR 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 2 cut(s) 152, 278
Psp5II RGGWCCY 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 209, 210, 401, 476
PspPI GGNCC 2 cut(s) 208, 400
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 620, 745
RsaNI GTAC 2 cut(s) 619, 744
RseI CAYNNNNRTG 3 cut(s) 121, 483, 787
SacI GAGCTC 2 cut(s) 152, 278
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 261, 313, 567, 695
Sau96I GGNCC 2 cut(s) 208, 400
ScaI AGTACT 1 cut(s) 745
SchI GAGTC 4 cut(s) 225, 553, 557, 740
ScrFI CCNGG 3 cut(s) 192, 397, 469
SduI GDGCHC 3 cut(s) 133, 152, 278
SfaNI GCATC 2 cut(s) 210, 475
SinI GGWCC 2 cut(s) 208, 400
SmiMI CAYNNNNRTG 3 cut(s) 121, 483, 787
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 4 cut(s) 50, 108, 706, 796
SsiI CCGC 3 cut(s) 251, 488, 530
SspMI CTAG 2 cut(s) 581, 636
SstI GAGCTC 2 cut(s) 152, 278
StyD4I CCNGG 3 cut(s) 190, 395, 467
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 3 cut(s) 79, 428, 743
TaiI ACGT 2 cut(s) 183, 500
TaqI TCGA 4 cut(s) 348, 423, 540, 698
TasI AATT 4 cut(s) 50, 108, 706, 796
TatI WGTACW 1 cut(s) 743
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 510, 724
TseI GCWGC 1 cut(s) 113
TspGWI ACGGA 2 cut(s) 426, 541
TspRI CASTG 2 cut(s) 510, 724
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 208, 400
XapI RAATTY 2 cut(s) 50, 796
XmaJI CCTAGG 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 778
XspI CTAG 2 cut(s) 581, 636
ZrmI AGTACT 1 cut(s) 745
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.